2 # Copyright (C) The Arvados Authors. All rights reserved.
4 # SPDX-License-Identifier: AGPL-3.0
6 . `dirname "$(readlink -f "$0")"`/libcloud-pin.sh
9 . `dirname "$(readlink -f "$0")"`/run-library.sh
11 read -rd "\000" helpmessage <<EOF
12 $(basename $0): Install and test Arvados components.
14 Exit non-zero if any tests fail.
17 $(basename $0) WORKSPACE=/path/to/arvados [options]
21 --skip FOO Do not test the FOO component.
22 --skip sanity Skip initial dev environment sanity checks.
23 --skip install Do not run any install steps. Just run tests.
24 You should provide GOPATH, GEMHOME, and VENVDIR options
25 from a previous invocation if you use this option.
26 --only FOO Do not test anything except the FOO component.
27 --temp DIR Install components and dependencies under DIR instead of
28 making a new temporary directory. Implies --leave-temp.
29 --leave-temp Do not remove GOPATH, virtualenv, and other temp dirs at exit.
30 Instead, show the path to give as --temp to reuse them in
31 subsequent invocations.
32 --repeat N Repeat each install/test step until it succeeds N times.
33 --retry Prompt to retry if an install or test suite fails.
34 --only-install Run specific install step
35 --short Skip (or scale down) some slow tests.
36 --interactive Set up, then prompt for test/install steps to perform.
37 WORKSPACE=path Arvados source tree to test.
38 CONFIGSRC=path Dir with api server config files to copy into source tree.
39 (If none given, leave config files alone in source tree.)
40 services/api_test="TEST=test/functional/arvados/v1/collections_controller_test.rb"
41 Restrict apiserver tests to the given file
42 sdk/python_test="--test-suite tests.test_keep_locator"
43 Restrict Python SDK tests to the given class
44 apps/workbench_test="TEST=test/integration/pipeline_instances_test.rb"
45 Restrict Workbench tests to the given file
46 services/arv-git-httpd_test="-check.vv"
47 Show all log messages, even when tests pass (also works
48 with services/keepstore_test etc.)
50 Print more debug messages
51 envvar=value Set \$envvar to value. Primarily useful for WORKSPACE,
52 *_test, and other examples shown above.
54 Assuming "--skip install" is not given, all components are installed
55 into \$GOPATH, \$VENDIR, and \$GEMHOME before running any tests. Many
56 test suites depend on other components being installed, and installing
57 everything tends to be quicker than debugging dependencies.
59 As a special concession to the current CI server config, CONFIGSRC
60 defaults to $HOME/arvados-api-server if that directory exists.
62 More information and background:
64 https://arvados.org/projects/arvados/wiki/Running_tests
69 apps/workbench_units (*)
70 apps/workbench_functionals (*)
71 apps/workbench_integration (*)
72 apps/workbench_benchmark
73 apps/workbench_profile
84 lib/dispatchcloud/container
85 lib/dispatchcloud/scheduler
86 lib/dispatchcloud/ssh_executor
87 lib/dispatchcloud/worker
89 services/arv-git-httpd
91 services/dockercleaner
100 services/nodemanager_integration
102 services/crunch-dispatch-local
103 services/crunch-dispatch-slurm
125 tools/crunchstat-summary
126 tools/crunchstat-summary:py3
129 tools/keep-block-check
131 (*) apps/workbench is shorthand for apps/workbench_units +
132 apps/workbench_functionals + apps/workbench_integration
136 # First make sure to remove any ARVADOS_ variables from the calling
137 # environment that could interfere with the tests.
138 unset $(env | cut -d= -f1 | grep \^ARVADOS_)
140 # Reset other variables that could affect our [tests'] behavior by
157 if [[ -z "$temp" ]]; then
158 # we didn't even get as far as making a temp dir
160 elif [[ -z "$temp_preserve" ]]; then
163 echo "Leaving behind temp dirs in $temp"
169 echo >&2 "Fatal: $* (encountered in ${FUNCNAME[1]} at ${BASH_SOURCE[1]} line ${BASH_LINENO[0]})"
175 if which create-plot-data-from-log.sh >/dev/null; then
176 create-plot-data-from-log.sh $BUILD_NUMBER "$WORKSPACE/apps/workbench/log/test.log" "$WORKSPACE/apps/workbench/log/"
178 rotate_logfile "$WORKSPACE/apps/workbench/log/" "test.log"
180 rotate_logfile "$WORKSPACE/services/api/log/" "test.log"
187 [[ -n "${skip[sanity]}" ]] && return 0
188 ( [[ -n "$WORKSPACE" ]] && [[ -d "$WORKSPACE/services" ]] ) \
189 || fatal "WORKSPACE environment variable not set to a source directory (see: $0 --help)"
190 echo Checking dependencies:
191 echo -n 'virtualenv: '
192 virtualenv --version \
193 || fatal "No virtualenv. Try: apt-get install virtualenv (on ubuntu: python-virtualenv)"
196 || fatal "No ruby. Install >=2.1.9 (using rbenv, rvm, or source)"
199 || fatal "No go binary. See http://golang.org/doc/install"
200 [[ $(go version) =~ go1.([0-9]+) ]] && [[ ${BASH_REMATCH[1]} -ge 10 ]] \
201 || fatal "Go >= 1.10 required. See http://golang.org/doc/install"
203 gcc --version | egrep ^gcc \
204 || fatal "No gcc. Try: apt-get install build-essential"
206 find /usr/include -path '*fuse/fuse.h' | egrep --max-count=1 . \
207 || fatal "No fuse/fuse.h. Try: apt-get install libfuse-dev"
209 find /usr/include -path '*gnutls/gnutls.h' | egrep --max-count=1 . \
210 || fatal "No gnutls/gnutls.h. Try: apt-get install libgnutls28-dev"
211 echo -n 'Python2 pyconfig.h: '
212 find /usr/include -path '*/python2*/pyconfig.h' | egrep --max-count=1 . \
213 || fatal "No Python2 pyconfig.h. Try: apt-get install python2.7-dev"
214 echo -n 'Python3 pyconfig.h: '
215 find /usr/include -path '*/python3*/pyconfig.h' | egrep --max-count=1 . \
216 || fatal "No Python3 pyconfig.h. Try: apt-get install python3-dev"
218 PATH="$PATH:/sbin:/usr/sbin:/usr/local/sbin" nginx -v \
219 || fatal "No nginx. Try: apt-get install nginx"
221 perl -v | grep version \
222 || fatal "No perl. Try: apt-get install perl"
223 for mod in ExtUtils::MakeMaker JSON LWP Net::SSL; do
224 echo -n "perl $mod: "
225 perl -e "use $mod; print \"\$$mod::VERSION\\n\"" \
226 || fatal "No $mod. Try: apt-get install perl-modules libcrypt-ssleay-perl libjson-perl libwww-perl"
230 || fatal "No gitolite. Try: apt-get install gitolite3"
233 || fatal "No npm. Try: wget -O- https://nodejs.org/dist/v6.11.2/node-v6.11.2-linux-x64.tar.xz | sudo tar -C /usr/local -xJf - && sudo ln -s ../node-v6.11.2-linux-x64/bin/{node,npm} /usr/local/bin/"
235 cadaver --version | grep -w cadaver \
236 || fatal "No cadaver. Try: apt-get install cadaver"
237 echo -n 'libattr1 xattr.h: '
238 find /usr/include -path '*/attr/xattr.h' | egrep --max-count=1 . \
239 || fatal "No libattr1 xattr.h. Try: apt-get install libattr1-dev"
240 echo -n 'libcurl curl.h: '
241 find /usr/include -path '*/curl/curl.h' | egrep --max-count=1 . \
242 || fatal "No libcurl curl.h. Try: apt-get install libcurl4-gnutls-dev"
243 echo -n 'libpq libpq-fe.h: '
244 find /usr/include -path '*/postgresql/libpq-fe.h' | egrep --max-count=1 . \
245 || fatal "No libpq libpq-fe.h. Try: apt-get install libpq-dev"
246 echo -n 'services/api/config/database.yml: '
247 if [[ ! -f "$WORKSPACE/services/api/config/database.yml" ]]; then
248 fatal "Please provide a database.yml file for the test suite"
252 echo -n 'postgresql: '
253 psql --version || fatal "No postgresql. Try: apt-get install postgresql postgresql-client-common"
254 echo -n 'phantomjs: '
255 phantomjs --version || fatal "No phantomjs. Try: apt-get install phantomjs"
257 which Xvfb || fatal "No xvfb. Try: apt-get install xvfb"
259 dot -V || fatal "No graphviz. Try: apt-get install graphviz"
260 echo -n 'geckodriver: '
261 geckodriver --version | grep ^geckodriver || echo "No geckodriver. Try: wget -O- https://github.com/mozilla/geckodriver/releases/download/v0.23.0/geckodriver-v0.23.0-linux64.tar.gz | sudo tar -C /usr/local/bin -xzf - geckodriver"
263 if [[ "$NEED_SDK_R" = true ]]; then
266 which Rscript || fatal "No Rscript. Try: apt-get install r-base"
268 Rscript -e "library('testthat')" || fatal "No testthat. Try: apt-get install r-cran-testthat"
269 # needed for roxygen2, needed for devtools, needed for R sdk
270 pkg-config --exists libxml-2.0 || fatal "No libxml2. Try: apt-get install libxml2-dev"
271 # needed for pkgdown, builds R SDK doc pages
272 which pandoc || fatal "No pandoc. Try: apt-get install pandoc"
277 # i.e. rotate_logfile "$WORKSPACE/apps/workbench/log/" "test.log"
278 # $BUILD_NUMBER is set by Jenkins if this script is being called as part of a Jenkins run
279 if [[ -f "$1/$2" ]]; then
280 THEDATE=`date +%Y%m%d%H%M%S`
281 mv "$1/$2" "$1/$THEDATE-$BUILD_NUMBER-$2"
282 gzip "$1/$THEDATE-$BUILD_NUMBER-$2"
290 skip[apps/workbench_profile]=1
291 # nodemanager_integration tests are not reliable, see #12061.
292 skip[services/nodemanager_integration]=1
299 echo >&2 "$helpmessage"
307 only[$1]=1; skip[$1]=""; shift
319 only_install="$1"; shift
329 repeat=$((${1}+0)); shift
335 suite="${arg%%_test=*}"
337 testargs["$suite"]="$args"
340 eval export $(echo $arg | cut -d= -f1)=\"$(echo $arg | cut -d= -f2-)\"
343 echo >&2 "$0: Unrecognized option: '$arg'. Try: $0 --help"
349 # R SDK installation is very slow (~360s in a clean environment) and only
350 # required when testing it. Skip that step if it is not needed.
353 if [[ ${#only[@]} -ne 0 ]] &&
354 [[ -z "${only['sdk/R']}" && -z "${only['doc']}" ]]; then
358 if [[ ${skip["sdk/R"]} == 1 && ${skip["doc"]} == 1 ]]; then
362 if [[ $NEED_SDK_R == false ]]; then
363 echo "R SDK not needed, it will not be installed."
367 if [[ -n "$ARVADOS_TEST_API_HOST" ]]; then
370 . "$VENVDIR/bin/activate"
371 echo 'Starting API, keepproxy, keep-web, ws, arv-git-httpd, and nginx ssl proxy...'
372 if [[ ! -d "$WORKSPACE/services/api/log" ]]; then
373 mkdir -p "$WORKSPACE/services/api/log"
375 # Remove empty api.pid file if it exists
376 if [[ -f "$WORKSPACE/tmp/api.pid" && ! -s "$WORKSPACE/tmp/api.pid" ]]; then
377 rm -f "$WORKSPACE/tmp/api.pid"
379 all_services_stopped=
382 && eval $(python sdk/python/tests/run_test_server.py start --auth admin || echo "fail=1; false") \
383 && export ARVADOS_TEST_API_HOST="$ARVADOS_API_HOST" \
384 && export ARVADOS_TEST_API_INSTALLED="$$" \
385 && python sdk/python/tests/run_test_server.py start_controller \
386 && python sdk/python/tests/run_test_server.py start_keep_proxy \
387 && python sdk/python/tests/run_test_server.py start_keep-web \
388 && python sdk/python/tests/run_test_server.py start_arv-git-httpd \
389 && python sdk/python/tests/run_test_server.py start_ws \
390 && eval $(python sdk/python/tests/run_test_server.py start_nginx || echo "fail=1; false") \
391 && (env | egrep ^ARVADOS) \
394 if [[ $fail != 0 ]]; then
395 unset ARVADOS_TEST_API_HOST
401 if [[ -n "$all_services_stopped" ]]; then
404 unset ARVADOS_TEST_API_HOST
405 . "$VENVDIR/bin/activate" || return
407 && python sdk/python/tests/run_test_server.py stop_nginx \
408 && python sdk/python/tests/run_test_server.py stop_arv-git-httpd \
409 && python sdk/python/tests/run_test_server.py stop_ws \
410 && python sdk/python/tests/run_test_server.py stop_keep-web \
411 && python sdk/python/tests/run_test_server.py stop_keep_proxy \
412 && python sdk/python/tests/run_test_server.py stop_controller \
413 && python sdk/python/tests/run_test_server.py stop \
414 && all_services_stopped=1
419 failures+=("($(basename $0) interrupted)")
424 setup_ruby_environment() {
425 if [[ -s "$HOME/.rvm/scripts/rvm" ]] ; then
426 source "$HOME/.rvm/scripts/rvm"
428 elif [[ -s "/usr/local/rvm/scripts/rvm" ]] ; then
429 source "/usr/local/rvm/scripts/rvm"
435 if [[ "$using_rvm" == true ]]; then
436 # If rvm is in use, we can't just put separate "dependencies"
437 # and "gems-under-test" paths to GEM_PATH: passenger resets
438 # the environment to the "current gemset", which would lose
439 # our GEM_PATH and prevent our test suites from running ruby
440 # programs (for example, the Workbench test suite could not
441 # boot an API server or run arv). Instead, we have to make an
442 # rvm gemset and use it for everything.
444 [[ `type rvm | head -n1` == "rvm is a function" ]] \
447 # Put rvm's favorite path back in first place (overriding
448 # virtualenv, which just put itself there). Ignore rvm's
449 # complaint about not being in first place already.
450 rvm use @default 2>/dev/null
452 # Create (if needed) and switch to an @arvados-tests-* gemset,
453 # salting the gemset name so it doesn't interfere with
454 # concurrent builds in other workspaces. Leave the choice of
455 # ruby to the caller.
456 gemset="arvados-tests-$(echo -n "${WORKSPACE}" | md5sum | head -c16)"
457 rvm use "@${gemset}" --create \
458 || fatal 'rvm gemset setup'
462 # When our "bundle install"s need to install new gems to
463 # satisfy dependencies, we want them to go where "gem install
464 # --user-install" would put them. (However, if the caller has
465 # already set GEM_HOME, we assume that's where dependencies
466 # should be installed, and we should leave it alone.)
468 if [ -z "$GEM_HOME" ]; then
469 user_gempath="$(gem env gempath)"
470 export GEM_HOME="${user_gempath%%:*}"
472 PATH="$(gem env gemdir)/bin:$PATH"
474 # When we build and install our own gems, we install them in our
475 # $GEMHOME tmpdir, and we want them to be at the front of GEM_PATH and
476 # PATH so integration tests prefer them over other versions that
477 # happen to be installed in $user_gempath, system dirs, etc.
479 tmpdir_gem_home="$(env - PATH="$PATH" HOME="$GEMHOME" gem env gempath | cut -f1 -d:)"
480 PATH="$tmpdir_gem_home/bin:$PATH"
481 export GEM_PATH="$tmpdir_gem_home"
483 echo "Will install dependencies to $(gem env gemdir)"
484 echo "Will install arvados gems to $tmpdir_gem_home"
485 echo "Gem search path is GEM_PATH=$GEM_PATH"
487 bundle config || gem install bundler \
488 || fatal 'install bundler'
492 if [[ "$using_rvm" == true ]]; then
495 GEM_HOME="$tmpdir_gem_home" GEM_PATH="$tmpdir_gem_home" "$@"
499 gem_uninstall_if_exists() {
500 if gem list "$1\$" | egrep '^\w'; then
501 gem uninstall --force --all --executables "$1"
506 local venvdest="$1"; shift
507 if ! [[ -e "$venvdest/bin/activate" ]] || ! [[ -e "$venvdest/bin/pip" ]]; then
508 virtualenv --setuptools "$@" "$venvdest" || fatal "virtualenv $venvdest failed"
509 elif [[ -n "$short" ]]; then
512 if [[ $("$venvdest/bin/python" --version 2>&1) =~ \ 3\.[012]\. ]]; then
513 # pip 8.0.0 dropped support for python 3.2, e.g., debian wheezy
514 "$venvdest/bin/pip" install --no-cache-dir 'setuptools>=18.5' 'pip>=7,<8'
516 "$venvdest/bin/pip" install --no-cache-dir 'setuptools>=18.5' 'pip>=7'
518 # ubuntu1404 can't seem to install mock via tests_require, but it can do this.
519 "$venvdest/bin/pip" install --no-cache-dir 'mock>=1.0' 'pbr<1.7.0'
525 echo "WORKSPACE=$WORKSPACE"
527 if [[ -z "$CONFIGSRC" ]] && [[ -d "$HOME/arvados-api-server" ]]; then
528 # Jenkins expects us to use this by default.
529 CONFIGSRC="$HOME/arvados-api-server"
532 # Clean up .pyc files that may exist in the workspace
534 find -name '*.pyc' -delete
536 if [[ -z "$temp" ]]; then
540 # Set up temporary install dirs (unless existing dirs were supplied)
541 for tmpdir in VENVDIR VENV3DIR GOPATH GEMHOME PERLINSTALLBASE R_LIBS
543 if [[ -z "${!tmpdir}" ]]; then
544 eval "$tmpdir"="$temp/$tmpdir"
546 if ! [[ -d "${!tmpdir}" ]]; then
547 mkdir "${!tmpdir}" || fatal "can't create ${!tmpdir} (does $temp exist?)"
551 rm -vf "${WORKSPACE}/tmp/*.log"
553 export PERLINSTALLBASE
554 export PERL5LIB="$PERLINSTALLBASE/lib/perl5${PERL5LIB:+:$PERL5LIB}"
560 # Jenkins config requires that glob tmp/*.log match something. Ensure
561 # that happens even if we don't end up running services that set up
563 mkdir -p "${WORKSPACE}/tmp/" || fatal "could not mkdir ${WORKSPACE}/tmp"
564 touch "${WORKSPACE}/tmp/controller.log" || fatal "could not touch ${WORKSPACE}/tmp/controller.log"
566 unset http_proxy https_proxy no_proxy
569 # Note: this must be the last time we change PATH, otherwise rvm will
571 setup_ruby_environment
579 mkdir -p "$GOPATH/src/git.curoverse.com"
580 if [[ ! -h "$GOPATH/src/git.curoverse.com/arvados.git" ]]; then
582 "$GOPATH/src/git.curoverse.com/arvados.git/tmp/GOPATH" \
583 "$GOPATH/src/git.curoverse.com/arvados.git/tmp" \
584 "$GOPATH/src/git.curoverse.com/arvados.git"; do
585 [[ -d "$d" ]] && rmdir "$d"
589 "$GOPATH/src/git.curoverse.com/arvados.git/arvados" \
590 "$GOPATH/src/git.curoverse.com/arvados.git"; do
591 [[ -h "$d" ]] && rm "$d"
593 ln -vsfT "$WORKSPACE" "$GOPATH/src/git.curoverse.com/arvados.git"
594 go get -v github.com/kardianos/govendor
595 cd "$GOPATH/src/git.curoverse.com/arvados.git"
596 if [[ -n "$short" ]]; then
598 "$GOPATH/bin/govendor" sync
600 # Remove cached source dirs in workdir. Otherwise, they will
601 # not qualify as +missing or +external below, and we won't be
602 # able to detect that they're missing from vendor/vendor.json.
605 "$GOPATH/bin/govendor" sync
606 [[ -z $("$GOPATH/bin/govendor" list +unused +missing +external | tee /dev/stderr) ]] \
607 || fatal "vendor/vendor.json has unused or missing dependencies -- try:
609 (export GOPATH=\"${GOPATH}\"; cd \$GOPATH/src/git.curoverse.com/arvados.git && \$GOPATH/bin/govendor add +missing +external && \$GOPATH/bin/govendor remove +unused)
613 ) || fatal "Go setup failed"
615 setup_virtualenv "$VENVDIR" --python python2.7
616 . "$VENVDIR/bin/activate"
618 # Needed for run_test_server.py which is used by certain (non-Python) tests.
619 pip install --no-cache-dir PyYAML \
620 || fatal "pip install PyYAML failed"
622 # Preinstall libcloud if using a fork; otherwise nodemanager "pip
623 # install" won't pick it up by default.
624 if [[ -n "$LIBCLOUD_PIN_SRC" ]]; then
625 pip freeze 2>/dev/null | egrep ^apache-libcloud==$LIBCLOUD_PIN \
626 || pip install --pre --ignore-installed --no-cache-dir "$LIBCLOUD_PIN_SRC" >/dev/null \
627 || fatal "pip install apache-libcloud failed"
630 # Deactivate Python 2 virtualenv
633 # If Python 3 is available, set up its virtualenv in $VENV3DIR.
634 # Otherwise, skip dependent tests.
635 PYTHON3=$(which python3)
636 if [[ ${?} = 0 ]]; then
637 setup_virtualenv "$VENV3DIR" --python python3
642 Warning: python3 could not be found. Python 3 tests will be skipped.
647 if ! which bundler >/dev/null
649 gem install --user-install bundler || fatal 'Could not install bundler'
658 if [[ "$remain" -gt 1 ]]; then
659 remain=$((${remain}-1))
660 title "(repeating ${remain} more times)"
664 elif [[ "$retry" == 1 ]]; then
665 read -p 'Try again? [Y/n] ' x
666 if [[ "$x" != "y" ]] && [[ "$x" != "" ]]
678 apps/workbench_units | apps/workbench_functionals | apps/workbench_integration)
681 services/nodemanager | services/nodemanager_integration)
682 suite=services/nodemanager_suite
688 if [[ -n "${skip[$suite]}" || \
689 -n "${skip[$1]}" || \
690 (${#only[@]} -ne 0 && ${only[$suite]} -eq 0 && ${only[$1]} -eq 0) ]]; then
697 doc | lib/cli | lib/cloud/azure | lib/cloud/ec2 | lib/cmd | lib/dispatchcloud/ssh_executor | lib/dispatchcloud/worker)
698 # don't care whether services are running
701 if ! start_services; then
702 title "test $1 -- failed to start services"
707 retry do_test_once ${@}
716 if which deactivate >/dev/null; then deactivate; fi
717 if ! . "$VENVDIR/bin/activate"
720 elif [[ "$2" == "go" ]]
722 covername="coverage-$(echo "$1" | sed -e 's/\//_/g')"
723 coverflags=("-covermode=count" "-coverprofile=$WORKSPACE/tmp/.$covername.tmp")
724 # We do "go get -t" here to catch compilation errors
725 # before trying "go test". Otherwise, coverage-reporting
726 # mode makes Go show the wrong line numbers when reporting
727 # compilation errors.
728 go get -ldflags "-X main.version=${ARVADOS_VERSION:-$(git log -n1 --format=%H)-dev}" -t "git.curoverse.com/arvados.git/$1" && \
729 cd "$GOPATH/src/git.curoverse.com/arvados.git/$1" && \
730 [[ -z "$(gofmt -e -d . | tee /dev/stderr)" ]] && \
731 if [[ -n "${testargs[$1]}" ]]
733 # "go test -check.vv giturl" doesn't work, but this
735 go test ${short:+-short} ${testargs[$1]}
737 # The above form gets verbose even when testargs is
738 # empty, so use this form in such cases:
739 go test ${short:+-short} ${coverflags[@]} "git.curoverse.com/arvados.git/$1"
742 if [[ -f "$WORKSPACE/tmp/.$covername.tmp" ]]
744 go tool cover -html="$WORKSPACE/tmp/.$covername.tmp" -o "$WORKSPACE/tmp/$covername.html"
745 rm "$WORKSPACE/tmp/.$covername.tmp"
747 elif [[ "$2" == "pip" ]]
750 cd "$WORKSPACE/$1" && while :
752 tries=$((${tries}+1))
753 # $3 can name a path directory for us to use, including trailing
754 # slash; e.g., the bin/ subdirectory of a virtualenv.
755 "${3}python" setup.py ${short:+--short-tests-only} test ${testargs[$1]}
757 if [[ ${tries} < 3 && ${result} == 137 ]]
759 printf '\n*****\n%s tests killed -- retrying\n*****\n\n' "$1"
765 elif [[ "$2" != "" ]]
772 checkexit $result "$1 tests"
773 title "test $1 -- `timer`"
778 if [[ -n "${skip[install]}" || ( -n "${only_install}" && "${only_install}" != "${1}" && "${only_install}" != "${2}" ) ]]; then
781 retry do_install_once ${@}
788 if which deactivate >/dev/null; then deactivate; fi
789 if [[ "$1" != "env" ]] && ! . "$VENVDIR/bin/activate"; then
791 elif [[ "$2" == "go" ]]
793 go get -ldflags "-X main.version=${ARVADOS_VERSION:-$(git log -n1 --format=%H)-dev}" -t "git.curoverse.com/arvados.git/$1"
794 elif [[ "$2" == "pip" ]]
796 # $3 can name a path directory for us to use, including trailing
797 # slash; e.g., the bin/ subdirectory of a virtualenv.
799 # Need to change to a different directory after creating
800 # the source dist package to avoid a pip bug.
801 # see https://arvados.org/issues/5766 for details.
803 # Also need to install twice, because if it believes the package is
804 # already installed, pip it won't install it. So the first "pip
805 # install" ensures that the dependencies are met, the second "pip
806 # install" ensures that we've actually installed the local package
809 && "${3}python" setup.py sdist rotate --keep=1 --match .tar.gz \
811 && "${3}pip" install --no-cache-dir --quiet "$WORKSPACE/$1/dist"/*.tar.gz \
812 && "${3}pip" install --no-cache-dir --quiet --no-deps --ignore-installed "$WORKSPACE/$1/dist"/*.tar.gz
813 elif [[ "$2" != "" ]]
820 checkexit $result "$1 install"
821 title "install $1 -- `timer`"
825 bundle_install_trylocal() {
828 echo "(Running bundle install --local. 'could not find package' messages are OK.)"
829 if ! bundle install --local --no-deployment; then
830 echo "(Running bundle install again, without --local.)"
831 bundle install --no-deployment
838 cd "$WORKSPACE/doc" \
839 && bundle_install_trylocal \
846 with_test_gemset gem_uninstall_if_exists "$gemname" \
847 && cd "$WORKSPACE/$srcpath" \
848 && bundle_install_trylocal \
849 && gem build "$gemname.gemspec" \
850 && with_test_gemset gem install --no-ri --no-rdoc $(ls -t "$gemname"-*.gem|head -n1)
854 install_gem arvados sdk/ruby
858 if [[ "$NEED_SDK_R" = true ]]; then
859 cd "$WORKSPACE/sdk/R" \
860 && Rscript --vanilla install_deps.R
865 cd "$WORKSPACE/sdk/perl" \
866 && perl Makefile.PL INSTALL_BASE="$PERLINSTALLBASE" \
867 && make install INSTALLDIRS=perl
871 install_gem arvados-cli sdk/cli
874 install_services/login-sync() {
875 install_gem arvados-login-sync services/login-sync
878 install_services/api() {
879 cd "$WORKSPACE/services/api" \
880 && RAILS_ENV=test bundle_install_trylocal
882 rm -f config/environments/test.rb
883 cp config/environments/test.rb.example config/environments/test.rb
885 if [ -n "$CONFIGSRC" ]
887 for f in database.yml
889 cp "$CONFIGSRC/$f" config/ || fatal "$f"
893 # Clear out any lingering postgresql connections to the test
894 # database, so that we can drop it. This assumes the current user
895 # is a postgresql superuser.
896 cd "$WORKSPACE/services/api" \
897 && test_database=$(python -c "import yaml; print yaml.load(file('config/database.yml'))['test']['database']") \
898 && psql "$test_database" -c "SELECT pg_terminate_backend (pg_stat_activity.pid::int) FROM pg_stat_activity WHERE pg_stat_activity.datname = '$test_database';" 2>/dev/null
900 mkdir -p "$WORKSPACE/services/api/tmp/pids"
902 cert="$WORKSPACE/services/api/tmp/self-signed"
903 if [[ ! -e "$cert.pem" || "$(date -r "$cert.pem" +%s)" -lt 1512659226 ]]; then
905 dir="$WORKSPACE/services/api/tmp"
907 openssl req -newkey rsa:2048 -nodes -subj '/C=US/ST=State/L=City/CN=localhost' -out "$cert.csr" -keyout "$cert.key" </dev/null
908 openssl x509 -req -in "$cert.csr" -signkey "$cert.key" -out "$cert.pem" -days 3650 -extfile <(printf 'subjectAltName=DNS:localhost,DNS:::1,DNS:0.0.0.0,DNS:127.0.0.1,IP:::1,IP:0.0.0.0,IP:127.0.0.1')
912 cd "$WORKSPACE/services/api" \
914 && mkdir -p tmp/git \
916 && tar xf ../../test/test.git.tar \
917 && mkdir -p internal.git \
918 && git --git-dir internal.git init \
921 cd "$WORKSPACE/services/api" \
922 && RAILS_ENV=test bundle exec rake db:drop \
923 && RAILS_ENV=test bundle exec rake db:setup \
924 && RAILS_ENV=test bundle exec rake db:fixtures:load
927 declare -a pythonstuff
934 services/dockercleaner:py3
937 tools/crunchstat-summary
952 lib/dispatchcloud/container
953 lib/dispatchcloud/scheduler
954 lib/dispatchcloud/ssh_executor
955 lib/dispatchcloud/worker
967 services/arv-git-httpd
973 services/keep-balance
975 services/crunch-dispatch-local
976 services/crunch-dispatch-slurm
979 tools/keep-block-check
985 install_apps/workbench() {
986 cd "$WORKSPACE/apps/workbench" \
987 && mkdir -p tmp/cache \
988 && RAILS_ENV=test bundle_install_trylocal \
989 && RAILS_ENV=test RAILS_GROUPS=assets bundle exec rake npm:install
996 ARVADOS_API_HOST=qr1hi.arvadosapi.com
997 # Make sure python-epydoc is installed or the next line won't
999 PYTHONPATH=$WORKSPACE/sdk/python/ bundle exec rake linkchecker baseurl=file://$WORKSPACE/doc/.site/ arvados_workbench_host=https://workbench.$ARVADOS_API_HOST arvados_api_host=$ARVADOS_API_HOST
1003 test_services/api() {
1004 rm -f "$WORKSPACE/services/api/git-commit.version"
1005 cd "$WORKSPACE/services/api" \
1006 && env RAILS_ENV=test ${short:+RAILS_TEST_SHORT=1} bundle exec rake test TESTOPTS=-v ${testargs[services/api]}
1010 cd "$WORKSPACE/sdk/ruby" \
1011 && bundle exec rake test TESTOPTS=-v ${testargs[sdk/ruby]}
1015 if [[ "$NEED_SDK_R" = true ]]; then
1016 cd "$WORKSPACE/sdk/R" \
1017 && Rscript --vanilla run_test.R
1022 cd "$WORKSPACE/sdk/cli" \
1023 && mkdir -p /tmp/keep \
1024 && KEEP_LOCAL_STORE=/tmp/keep bundle exec rake test TESTOPTS=-v ${testargs[sdk/cli]}
1027 test_services/login-sync() {
1028 cd "$WORKSPACE/services/login-sync" \
1029 && bundle exec rake test TESTOPTS=-v ${testargs[services/login-sync]}
1032 test_services/nodemanager_integration() {
1033 cd "$WORKSPACE/services/nodemanager" \
1034 && tests/integration_test.py ${testargs[services/nodemanager_integration]}
1037 test_apps/workbench_units() {
1038 cd "$WORKSPACE/apps/workbench" \
1039 && env RAILS_ENV=test ${short:+RAILS_TEST_SHORT=1} bundle exec rake test:units TESTOPTS=-v ${testargs[apps/workbench]}
1042 test_apps/workbench_functionals() {
1043 cd "$WORKSPACE/apps/workbench" \
1044 && env RAILS_ENV=test ${short:+RAILS_TEST_SHORT=1} bundle exec rake test:functionals TESTOPTS=-v ${testargs[apps/workbench]}
1047 test_apps/workbench_integration() {
1048 cd "$WORKSPACE/apps/workbench" \
1049 && env RAILS_ENV=test ${short:+RAILS_TEST_SHORT=1} bundle exec rake test:integration TESTOPTS=-v ${testargs[apps/workbench]}
1052 test_apps/workbench_benchmark() {
1053 cd "$WORKSPACE/apps/workbench" \
1054 && env RAILS_ENV=test ${short:+RAILS_TEST_SHORT=1} bundle exec rake test:benchmark ${testargs[apps/workbench_benchmark]}
1057 test_apps/workbench_profile() {
1058 cd "$WORKSPACE/apps/workbench" \
1059 && env RAILS_ENV=test ${short:+RAILS_TEST_SHORT=1} bundle exec rake test:profile ${testargs[apps/workbench_profile]}
1063 # Install parts needed by test suites
1065 do_install cmd/arvados-server go
1068 do_install sdk/python pip
1070 do_install services/api
1071 do_install services/arv-git-httpd go
1072 do_install services/keepproxy go
1073 do_install services/keepstore go
1074 do_install services/keep-web go
1075 do_install services/ws go
1085 do_install services/login-sync
1086 for p in "${pythonstuff[@]}"
1089 if [[ ${dir} = ${p} ]]; then
1090 if [[ -z ${skip[python2]} ]]; then
1091 do_install ${dir} pip
1093 elif [[ -n ${PYTHON3} ]]; then
1094 if [[ -z ${skip[python3]} ]]; then
1095 do_install ${dir} pip "$VENV3DIR/bin/"
1099 do_install services/api
1100 for g in "${gostuff[@]}"
1104 do_install apps/workbench
1109 do_test services/api
1111 # Shortcut for when we're only running apiserver tests. This saves a bit of time,
1112 # because we don't need to start up the api server for subsequent tests.
1113 if [ ! -z "$only" ] && [ "$only" == "services/api" ]; then
1114 rotate_logfile "$WORKSPACE/services/api/log/" "test.log"
1122 do_test services/login-sync
1123 do_test services/nodemanager_integration
1124 for p in "${pythonstuff[@]}"
1127 if [[ ${dir} = ${p} ]]; then
1128 if [[ -z ${skip[python2]} ]]; then
1131 elif [[ -n ${PYTHON3} ]]; then
1132 if [[ -z ${skip[python3]} ]]; then
1133 do_test ${dir} pip "$VENV3DIR/bin/"
1138 for g in "${gostuff[@]}"
1142 do_test apps/workbench_units
1143 do_test apps/workbench_functionals
1144 do_test apps/workbench_integration
1145 do_test apps/workbench_benchmark
1146 do_test apps/workbench_profile
1149 help_interactive() {
1150 echo "== Interactive commands:"
1151 echo "TARGET (short for 'test DIR')"
1153 echo "test TARGET:py3 (test with python3)"
1154 echo "test TARGET -check.vv (pass arguments to test)"
1155 echo "install TARGET"
1156 echo "install env (go/python libs)"
1157 echo "install deps (go/python libs + arvados components needed for integration tests)"
1158 echo "reset (...services used by integration tests)"
1160 echo "== Test targets:"
1161 echo "${!testfuncargs[@]}" | tr ' ' '\n' | sort | column
1166 declare -A testfuncargs=()
1167 for g in "${gostuff[@]}"; do
1168 testfuncargs[$g]="$g go"
1170 for p in "${pythonstuff[@]}"; do
1172 if [[ ${dir} = ${p} ]]; then
1173 testfuncargs[$p]="$dir pip $VENVDIR/bin/"
1175 testfuncargs[$p]="$dir pip $VENV3DIR/bin/"
1179 if [[ -z ${interactive} ]]; then
1186 if [[ -e "$VENVDIR/bin/activate" ]]; then stop_services; fi
1188 if [[ "$nextcmd" != "install deps" ]]; then
1190 elif [[ -e "$VENVDIR/bin/activate" ]]; then
1191 nextcmd="test lib/cmd"
1193 nextcmd="install deps"
1198 nextcmd="install deps"
1200 while read -p 'What next? ' -e -i "${nextcmd}" nextcmd; do
1201 read verb target opts <<<"${nextcmd}"
1213 target="${target%/}"
1214 testargs["$target"]="${opts}"
1220 tt="${testfuncargs[${target}]}"
1227 if [[ ${#successes[@]} -gt 0 || ${#failures[@]} -gt 0 ]]; then