1 # baseurl is the location of the generated site from the browser's
2 # perspective (e.g., http://doc.arvados.org or
3 # file:///tmp/arvados/doc/.site). To make docs show up inside
4 # workbench, use /doc here and add a symlink at
5 # apps/workbench/public/doc pointing to ../../../doc/.site
6 # You can also set these on the command line:
7 # $ rake generate baseurl=/example arvados_api_host=example.com
10 arvados_api_host: localhost
11 arvados_workbench_host: http://localhost
13 exclude: ["Rakefile", "tmp", "vendor"]
18 #- start/index.html.textile.liquid
20 #- start/getting_started/publicproject.html.textile.liquid
21 #- start/getting_started/firstpipeline.html.textile.liquid
23 #- start/getting_started/sharedata.html.textile.liquid
25 #- start/getting_started/nextsteps.html.textile.liquid
29 - user/index.html.textile.liquid
30 - user/getting_started/community.html.textile.liquid
31 - Run a pipeline using Workbench:
32 - user/getting_started/workbench.html.textile.liquid
33 - user/tutorials/tutorial-pipeline-workbench.html.textile.liquid
34 - Access an Arvados virtual machine:
35 - user/getting_started/vm-login-with-webshell.html.textile.liquid
36 - user/getting_started/ssh-access-unix.html.textile.liquid
37 - user/getting_started/ssh-access-windows.html.textile.liquid
38 - user/getting_started/check-environment.html.textile.liquid
39 - user/reference/api-tokens.html.textile.liquid
40 - Working with data sets:
41 - user/tutorials/tutorial-keep.html.textile.liquid
42 - user/tutorials/tutorial-keep-get.html.textile.liquid
43 - user/tutorials/tutorial-keep-mount.html.textile.liquid
44 - user/topics/keep.html.textile.liquid
45 - user/topics/arv-copy.html.textile.liquid
46 - Using Common Workflow Language:
47 - user/cwl/cwl-runner.html.textile.liquid
48 - user/cwl/cwl-style.html.textile.liquid
49 - Working on the command line:
50 - user/topics/running-pipeline-command-line.html.textile.liquid
51 - user/topics/arv-run.html.textile.liquid
52 - Working with git repositories:
53 - user/tutorials/add-new-repository.html.textile.liquid
54 - user/tutorials/git-arvados-guide.html.textile.liquid
55 - Develop an Arvados pipeline:
56 - user/tutorials/intro-crunch.html.textile.liquid
57 - user/tutorials/running-external-program.html.textile.liquid
58 - user/topics/crunch-tools-overview.html.textile.liquid
59 - user/tutorials/tutorial-firstscript.html.textile.liquid
60 - user/tutorials/tutorial-submit-job.html.textile.liquid
61 - user/topics/tutorial-parallel.html.textile.liquid
62 - user/topics/arv-docker.html.textile.liquid
63 - Develop a web service:
64 - user/topics/arv-web.html.textile.liquid
66 - user/topics/run-command.html.textile.liquid
67 - user/reference/job-pipeline-ref.html.textile.liquid
68 - user/examples/crunch-examples.html.textile.liquid
69 - Query the metadata database:
70 - user/topics/tutorial-trait-search.html.textile.liquid
72 - user/copying/copying.html.textile.liquid
73 - user/copying/agpl-3.0.html
74 - user/copying/LICENSE-2.0.html
75 - user/copying/by-sa-3.0.html
78 - sdk/index.html.textile.liquid
80 - sdk/python/sdk-python.html.textile.liquid
81 - sdk/python/example.html.textile.liquid
82 - sdk/python/python.html.textile.liquid
83 - sdk/python/crunch-utility-libraries.html.textile.liquid
84 - sdk/python/events.html.textile.liquid
86 - sdk/cli/install.html.textile.liquid
87 - sdk/cli/index.html.textile.liquid
88 - sdk/cli/reference.html.textile.liquid
89 - sdk/cli/subcommands.html.textile.liquid
91 - sdk/go/index.html.textile.liquid
92 - sdk/go/example.html.textile.liquid
94 - sdk/perl/index.html.textile.liquid
95 - sdk/perl/example.html.textile.liquid
97 - sdk/ruby/index.html.textile.liquid
98 - sdk/ruby/example.html.textile.liquid
100 - sdk/java/index.html.textile.liquid
101 - sdk/java/example.html.textile.liquid
104 - api/index.html.textile.liquid
105 - api/tokens.html.textile.liquid
106 - api/requests.html.textile.liquid
107 - api/methods.html.textile.liquid
108 - api/resources.html.textile.liquid
109 - api/permission-model.html.textile.liquid
110 - api/storage.html.textile.liquid
111 - api/execution.html.textile.liquid
112 - Permission and authentication:
113 - api/methods/api_client_authorizations.html.textile.liquid
114 - api/methods/api_clients.html.textile.liquid
115 - api/methods/authorized_keys.html.textile.liquid
116 - api/methods/groups.html.textile.liquid
117 - api/methods/users.html.textile.liquid
119 - api/methods/keep_services.html.textile.liquid
120 - api/methods/links.html.textile.liquid
121 - api/methods/logs.html.textile.liquid
122 - api/methods/nodes.html.textile.liquid
123 - api/methods/virtual_machines.html.textile.liquid
124 - api/methods/keep_disks.html.textile.liquid
126 - api/methods/collections.html.textile.liquid
127 - api/methods/repositories.html.textile.liquid
129 - api/methods/container_requests.html.textile.liquid
130 - api/methods/containers.html.textile.liquid
131 - api/methods/workflows.html.textile.liquid
132 - Jobs engine (deprecated):
133 - api/crunch-scripts.html.textile.liquid
134 - api/methods/jobs.html.textile.liquid
135 - api/methods/job_tasks.html.textile.liquid
136 - api/methods/pipeline_instances.html.textile.liquid
137 - api/methods/pipeline_templates.html.textile.liquid
138 - Metadata for bioinformatics:
139 - api/methods/humans.html.textile.liquid
140 - api/methods/specimens.html.textile.liquid
141 - api/methods/traits.html.textile.liquid
144 - install/index.html.textile.liquid
145 - Docker quick start:
146 - install/arvbox.html.textile.liquid
147 - Manual installation:
148 - install/install-manual-prerequisites.html.textile.liquid
149 - install/install-postgresql.html.textile.liquid
150 - install/install-sso.html.textile.liquid
151 - install/install-api-server.html.textile.liquid
152 - install/install-arv-git-httpd.html.textile.liquid
153 - install/install-workbench-app.html.textile.liquid
154 - install/install-shell-server.html.textile.liquid
155 - install/create-standard-objects.html.textile.liquid
156 - install/install-keepstore.html.textile.liquid
157 - install/configure-azure-blob-storage.html.textile.liquid
158 - install/install-keepproxy.html.textile.liquid
159 - install/install-keep-web.html.textile.liquid
160 - Containers API support on SLURM:
161 - install/crunch2-slurm/install-prerequisites.html.textile.liquid
162 - install/crunch2-slurm/install-compute-node.html.textile.liquid
163 - install/crunch2-slurm/install-dispatch.html.textile.liquid
164 - install/crunch2-slurm/install-test.html.textile.liquid
165 - Jobs API support (deprecated):
166 - install/install-crunch-dispatch.html.textile.liquid
167 - install/install-compute-node.html.textile.liquid
169 - install/copy_pipeline_from_curoverse.html.textile.liquid
170 - install/cheat_sheet.html.textile.liquid