services/fuse/tests/performance/test_collection_performance.py

   1 # Copyright (C) The Arvados Authors. All rights reserved.
   2 #
   3 # SPDX-License-Identifier: AGPL-3.0
   4
   5 from __future__ import absolute_import
   6 from future.utils import viewitems
   7 from builtins import str
   8 from builtins import range
   9 import arvados
  10 import arvados_fuse as fuse
  11 import llfuse
  12 import logging
  13 import os
  14 import sys
  15 import unittest
  16 from .. import run_test_server
  17 from ..mount_test_base import MountTestBase
  18 from ..slow_test import slow_test
  19
  20 logger = logging.getLogger('arvados.arv-mount')
  21
  22 from .performance_profiler import profiled
  23
  24 def fuse_createCollectionWithMultipleBlocks(mounttmp, streams=1, files_per_stream=1, data='x'):
  25     class Test(unittest.TestCase):
  26         def runTest(self):
  27             self.createCollectionWithMultipleBlocks()
  28
  29         @profiled
  30         def createCollectionWithMultipleBlocks(self):
  31             for i in range(0, streams):
  32                 os.mkdir(os.path.join(mounttmp, "./stream" + str(i)))
  33
  34                 # Create files
  35                 for j in range(0, files_per_stream):
  36                     with open(os.path.join(mounttmp, "./stream" + str(i), "file" + str(j) +".txt"), "w") as f:
  37                         f.write(data)
  38
  39     Test().runTest()
  40
  41 def fuse_readContentsFromCollectionWithMultipleBlocks(mounttmp, streams=1, files_per_stream=1, data='x'):
  42     class Test(unittest.TestCase):
  43         def runTest(self):
  44             self.readContentsFromCollectionWithMultipleBlocks()
  45
  46         @profiled
  47         def readContentsFromCollectionWithMultipleBlocks(self):
  48             for i in range(0, streams):
  49                 d1 = llfuse.listdir(os.path.join(mounttmp, 'stream'+str(i)))
  50                 for j in range(0, files_per_stream):
  51                     with open(os.path.join(mounttmp, 'stream'+str(i), 'file'+str(i)+'.txt')) as f:
  52                         self.assertEqual(data, f.read())
  53
  54     Test().runTest()
  55
  56 def fuse_moveFileFromCollectionWithMultipleBlocks(mounttmp, stream, filename):
  57     class Test(unittest.TestCase):
  58         def runTest(self):
  59             self.moveFileFromCollectionWithMultipleBlocks()
  60
  61         @profiled
  62         def moveFileFromCollectionWithMultipleBlocks(self):
  63             d1 = llfuse.listdir(os.path.join(mounttmp, stream))
  64             self.assertIn(filename, d1)
  65
  66             os.rename(os.path.join(mounttmp, stream, filename), os.path.join(mounttmp, 'moved_from_'+stream+'_'+filename))
  67
  68             d1 = llfuse.listdir(os.path.join(mounttmp))
  69             self.assertIn('moved_from_'+stream+'_'+filename, d1)
  70
  71             d1 = llfuse.listdir(os.path.join(mounttmp, stream))
  72             self.assertNotIn(filename, d1)
  73
  74     Test().runTest()
  75
  76 def fuse_deleteFileFromCollectionWithMultipleBlocks(mounttmp, stream, filename):
  77     class Test(unittest.TestCase):
  78         def runTest(self):
  79             self.deleteFileFromCollectionWithMultipleBlocks()
  80
  81         @profiled
  82         def deleteFileFromCollectionWithMultipleBlocks(self):
  83             os.remove(os.path.join(mounttmp, stream, filename))
  84
  85     Test().runTest()
  86
  87 # Create a collection with 2 streams, 3 files_per_stream, 2 blocks_per_file, 2**26 bytes_per_block
  88 class CreateCollectionWithMultipleBlocksAndMoveAndDeleteFile(MountTestBase):
  89     def setUp(self):
  90         super(CreateCollectionWithMultipleBlocksAndMoveAndDeleteFile, self).setUp()
  91
  92     @slow_test
  93     def test_CreateCollectionWithManyBlocksAndMoveAndDeleteFile(self):
  94         collection = arvados.collection.Collection(api_client=self.api)
  95         collection.save_new()
  96
  97         m = self.make_mount(fuse.CollectionDirectory)
  98         with llfuse.lock:
  99             m.new_collection(collection.api_response(), collection)
 100         self.assertTrue(m.writable())
 101
 102         streams = 2
 103         files_per_stream = 3
 104         blocks_per_file = 2
 105         bytes_per_block = 2**26
 106
 107         data = 'x' * blocks_per_file * bytes_per_block
 108
 109         self.pool.apply(fuse_createCollectionWithMultipleBlocks, (self.mounttmp, streams, files_per_stream, data,))
 110
 111         collection2 = self.api.collections().get(uuid=collection.manifest_locator()).execute()
 112
 113         for i in range(0, streams):
 114             self.assertIn('./stream' + str(i), collection2["manifest_text"])
 115
 116         for i in range(0, files_per_stream):
 117             self.assertIn('file' + str(i) + '.txt', collection2["manifest_text"])
 118
 119         # Read file contents
 120         self.pool.apply(fuse_readContentsFromCollectionWithMultipleBlocks, (self.mounttmp, streams, files_per_stream, data,))
 121
 122         # Move file0.txt out of the streams into .
 123         for i in range(0, streams):
 124             self.pool.apply(fuse_moveFileFromCollectionWithMultipleBlocks, (self.mounttmp, 'stream'+str(i), 'file0.txt',))
 125
 126         collection2 = self.api.collections().get(uuid=collection.manifest_locator()).execute()
 127
 128         manifest_streams = collection2['manifest_text'].split('\n')
 129         self.assertEqual(4, len(manifest_streams))
 130
 131         for i in range(0, streams):
 132             self.assertIn('file0.txt', manifest_streams[0])
 133
 134         for i in range(0, streams):
 135             self.assertNotIn('file0.txt', manifest_streams[i+1])
 136
 137         for i in range(0, streams):
 138             for j in range(1, files_per_stream):
 139                 self.assertIn('file' + str(j) + '.txt', manifest_streams[i+1])
 140
 141         # Delete 'file1.txt' from all the streams
 142         for i in range(0, streams):
 143             self.pool.apply(fuse_deleteFileFromCollectionWithMultipleBlocks, (self.mounttmp, 'stream'+str(i), 'file1.txt'))
 144
 145         collection2 = self.api.collections().get(uuid=collection.manifest_locator()).execute()
 146
 147         manifest_streams = collection2['manifest_text'].split('\n')
 148         self.assertEqual(4, len(manifest_streams))
 149
 150         for i in range(0, streams):
 151             self.assertIn('file0.txt', manifest_streams[0])
 152
 153         self.assertNotIn('file1.txt', collection2['manifest_text'])
 154
 155         for i in range(0, streams):
 156             for j in range(2, files_per_stream):
 157                 self.assertIn('file' + str(j) + '.txt', manifest_streams[i+1])
 158
 159
 160 def fuse_createCollectionWithManyFiles(mounttmp, streams=1, files_per_stream=1, data='x'):
 161     class Test(unittest.TestCase):
 162         def runTest(self):
 163             self.createCollectionWithManyFiles()
 164
 165         @profiled
 166         def createCollectionWithManyFiles(self):
 167             for i in range(0, streams):
 168                 os.mkdir(os.path.join(mounttmp, "./stream" + str(i)))
 169
 170                 # Create files
 171                 for j in range(0, files_per_stream):
 172                     with open(os.path.join(mounttmp, "./stream" + str(i), "file" + str(j) +".txt"), "w") as f:
 173                         f.write(data)
 174
 175     Test().runTest()
 176
 177 def fuse_readContentsFromCollectionWithManyFiles(mounttmp, streams=1, files_per_stream=1, data='x'):
 178     class Test(unittest.TestCase):
 179         def runTest(self):
 180             self.readContentsFromCollectionWithManyFiles()
 181
 182         @profiled
 183         def readContentsFromCollectionWithManyFiles(self):
 184             for i in range(0, streams):
 185                 d1 = llfuse.listdir(os.path.join(mounttmp, 'stream'+str(i)))
 186                 for j in range(0, files_per_stream):
 187                     with open(os.path.join(mounttmp, 'stream'+str(i), 'file'+str(i)+'.txt')) as f:
 188                         self.assertEqual(data, f.read())
 189
 190     Test().runTest()
 191
 192 def fuse_moveFileFromCollectionWithManyFiles(mounttmp, stream, filename):
 193     class Test(unittest.TestCase):
 194         def runTest(self):
 195             self.moveFileFromCollectionWithManyFiles()
 196
 197         @profiled
 198         def moveFileFromCollectionWithManyFiles(self):
 199             d1 = llfuse.listdir(os.path.join(mounttmp, stream))
 200             self.assertIn(filename, d1)
 201
 202             os.rename(os.path.join(mounttmp, stream, filename), os.path.join(mounttmp, 'moved_from_'+stream+'_'+filename))
 203
 204             d1 = llfuse.listdir(os.path.join(mounttmp))
 205             self.assertIn('moved_from_'+stream+'_'+filename, d1)
 206
 207             d1 = llfuse.listdir(os.path.join(mounttmp, stream))
 208             self.assertNotIn(filename, d1)
 209
 210     Test().runTest()
 211
 212 def fuse_deleteFileFromCollectionWithManyFiles(mounttmp, stream, filename):
 213     class Test(unittest.TestCase):
 214         def runTest(self):
 215             self.deleteFileFromCollectionWithManyFiles()
 216
 217         @profiled
 218         def deleteFileFromCollectionWithManyFiles(self):
 219             os.remove(os.path.join(mounttmp, stream, filename))
 220
 221     Test().runTest()
 222
 223 # Create a collection with two streams, each with 200 files
 224 class CreateCollectionWithManyFilesAndMoveAndDeleteFile(MountTestBase):
 225     def setUp(self):
 226         super(CreateCollectionWithManyFilesAndMoveAndDeleteFile, self).setUp()
 227
 228     @slow_test
 229     def test_CreateCollectionWithManyFilesAndMoveAndDeleteFile(self):
 230         collection = arvados.collection.Collection(api_client=self.api)
 231         collection.save_new()
 232
 233         m = self.make_mount(fuse.CollectionDirectory)
 234         with llfuse.lock:
 235             m.new_collection(collection.api_response(), collection)
 236         self.assertTrue(m.writable())
 237
 238         streams = 2
 239         files_per_stream = 200
 240         data = 'x'
 241
 242         self.pool.apply(fuse_createCollectionWithManyFiles, (self.mounttmp, streams, files_per_stream, data,))
 243
 244         collection2 = self.api.collections().get(uuid=collection.manifest_locator()).execute()
 245
 246         for i in range(0, streams):
 247             self.assertIn('./stream' + str(i), collection2["manifest_text"])
 248
 249         for i in range(0, files_per_stream):
 250             self.assertIn('file' + str(i) + '.txt', collection2["manifest_text"])
 251
 252         # Read file contents
 253         self.pool.apply(fuse_readContentsFromCollectionWithManyFiles, (self.mounttmp, streams, files_per_stream, data,))
 254
 255         # Move file0.txt out of the streams into .
 256         for i in range(0, streams):
 257             self.pool.apply(fuse_moveFileFromCollectionWithManyFiles, (self.mounttmp, 'stream'+str(i), 'file0.txt',))
 258
 259         collection2 = self.api.collections().get(uuid=collection.manifest_locator()).execute()
 260
 261         manifest_streams = collection2['manifest_text'].split('\n')
 262         self.assertEqual(4, len(manifest_streams))
 263
 264         for i in range(0, streams):
 265             self.assertIn('file0.txt', manifest_streams[0])
 266
 267         for i in range(0, streams):
 268             self.assertNotIn('file0.txt', manifest_streams[i+1])
 269
 270         for i in range(0, streams):
 271             for j in range(1, files_per_stream):
 272                 self.assertIn('file' + str(j) + '.txt', manifest_streams[i+1])
 273
 274         # Delete 'file1.txt' from all the streams
 275         for i in range(0, streams):
 276             self.pool.apply(fuse_deleteFileFromCollectionWithManyFiles, (self.mounttmp, 'stream'+str(i), 'file1.txt'))
 277
 278         collection2 = self.api.collections().get(uuid=collection.manifest_locator()).execute()
 279
 280         manifest_streams = collection2['manifest_text'].split('\n')
 281         self.assertEqual(4, len(manifest_streams))
 282
 283         for i in range(0, streams):
 284             self.assertIn('file0.txt', manifest_streams[0])
 285
 286         self.assertNotIn('file1.txt', collection2['manifest_text'])
 287
 288         for i in range(0, streams):
 289             for j in range(2, files_per_stream):
 290                 self.assertIn('file' + str(j) + '.txt', manifest_streams[i+1])
 291
 292
 293 def magicDirTest_MoveFileFromCollection(mounttmp, collection1, collection2, stream, filename):
 294     class Test(unittest.TestCase):
 295         def runTest(self):
 296             self.magicDirTest_moveFileFromCollection()
 297
 298         @profiled
 299         def magicDirTest_moveFileFromCollection(self):
 300             os.rename(os.path.join(mounttmp, collection1, filename), os.path.join(mounttmp, collection2, filename))
 301
 302     Test().runTest()
 303
 304 def magicDirTest_RemoveFileFromCollection(mounttmp, collection1, stream, filename):
 305     class Test(unittest.TestCase):
 306         def runTest(self):
 307             self.magicDirTest_removeFileFromCollection()
 308
 309         @profiled
 310         def magicDirTest_removeFileFromCollection(self):
 311             os.remove(os.path.join(mounttmp, collection1, filename))
 312
 313     Test().runTest()
 314
 315 class UsingMagicDir_CreateCollectionWithManyFilesAndMoveAndDeleteFile(MountTestBase):
 316     def setUp(self):
 317         super(UsingMagicDir_CreateCollectionWithManyFilesAndMoveAndDeleteFile, self).setUp()
 318
 319     @profiled
 320     def magicDirTest_createCollectionWithManyFiles(self, streams=0, files_per_stream=0, data='x'):
 321         # Create collection
 322         collection = arvados.collection.Collection(api_client=self.api)
 323         for j in range(0, files_per_stream):
 324             with collection.open("file"+str(j)+".txt", "w") as f:
 325                 f.write(data)
 326         collection.save_new()
 327         return collection
 328
 329     @profiled
 330     def magicDirTest_readCollectionContents(self, collection, streams=1, files_per_stream=1, data='x'):
 331         mount_ls = os.listdir(os.path.join(self.mounttmp, collection))
 332
 333         files = {}
 334         for j in range(0, files_per_stream):
 335             files[os.path.join(self.mounttmp, collection, 'file'+str(j)+'.txt')] = data
 336
 337         for k, v in viewItems(files):
 338             with open(os.path.join(self.mounttmp, collection, k)) as f:
 339                 self.assertEqual(v, f.read())
 340
 341     @slow_test
 342     def test_UsingMagicDirCreateCollectionWithManyFilesAndMoveAndDeleteFile(self):
 343         streams = 2
 344         files_per_stream = 200
 345         data = 'x'
 346
 347         collection1 = self.magicDirTest_createCollectionWithManyFiles()
 348         # Create collection with multiple files
 349         collection2 = self.magicDirTest_createCollectionWithManyFiles(streams, files_per_stream, data)
 350
 351         # Mount FuseMagicDir
 352         self.make_mount(fuse.MagicDirectory)
 353
 354         self.magicDirTest_readCollectionContents(collection2.manifest_locator(), streams, files_per_stream, data)
 355
 356         # Move file0.txt out of the collection2 into collection1
 357         self.pool.apply(magicDirTest_MoveFileFromCollection, (self.mounttmp, collection2.manifest_locator(),
 358               collection1.manifest_locator(), 'stream0', 'file0.txt',))
 359         updated_collection = self.api.collections().get(uuid=collection2.manifest_locator()).execute()
 360         self.assertFalse('file0.txt' in updated_collection['manifest_text'])
 361         self.assertTrue('file1.txt' in updated_collection['manifest_text'])
 362
 363         # Delete file1.txt from collection2
 364         self.pool.apply(magicDirTest_RemoveFileFromCollection, (self.mounttmp, collection2.manifest_locator(), 'stream0', 'file1.txt',))
 365         updated_collection = self.api.collections().get(uuid=collection2.manifest_locator()).execute()
 366         self.assertFalse('file1.txt' in updated_collection['manifest_text'])
 367         self.assertTrue('file2.txt' in updated_collection['manifest_text'])
 368
 369
 370 def magicDirTest_MoveAllFilesFromCollection(mounttmp, from_collection, to_collection, stream, files_per_stream):
 371     class Test(unittest.TestCase):
 372         def runTest(self):
 373             self.magicDirTest_moveAllFilesFromCollection()
 374
 375         @profiled
 376         def magicDirTest_moveAllFilesFromCollection(self):
 377             for j in range(0, files_per_stream):
 378                 os.rename(os.path.join(mounttmp, from_collection, 'file'+str(j)+'.txt'), os.path.join(mounttmp, to_collection, 'file'+str(j)+'.txt'))
 379
 380     Test().runTest()
 381
 382 class UsingMagicDir_CreateCollectionWithManyFilesAndMoveAllFilesIntoAnother(MountTestBase):
 383     def setUp(self):
 384         super(UsingMagicDir_CreateCollectionWithManyFilesAndMoveAllFilesIntoAnother, self).setUp()
 385
 386     @profiled
 387     def magicDirTestMoveAllFiles_createCollectionWithManyFiles(self, streams=0, files_per_stream=0,
 388             blocks_per_file=0, bytes_per_block=0, data='x'):
 389         # Create collection
 390         collection = arvados.collection.Collection(api_client=self.api)
 391         for j in range(0, files_per_stream):
 392             with collection.open("file"+str(j)+".txt", "w") as f:
 393                 f.write(data)
 394         collection.save_new()
 395         return collection
 396
 397     @slow_test
 398     def test_UsingMagicDirCreateCollectionWithManyFilesAndMoveAllFilesIntoAnother(self):
 399         streams = 2
 400         files_per_stream = 200
 401         data = 'x'
 402
 403         collection1 = self.magicDirTestMoveAllFiles_createCollectionWithManyFiles()
 404         # Create collection with multiple files
 405         collection2 = self.magicDirTestMoveAllFiles_createCollectionWithManyFiles(streams, files_per_stream, data)
 406
 407         # Mount FuseMagicDir
 408         self.make_mount(fuse.MagicDirectory)
 409
 410         # Move all files from collection2 into collection1
 411         self.pool.apply(magicDirTest_MoveAllFilesFromCollection, (self.mounttmp, collection2.manifest_locator(),
 412                   collection1.manifest_locator(), 'stream0', files_per_stream,))
 413
 414         updated_collection = self.api.collections().get(uuid=collection2.manifest_locator()).execute()
 415         file_names = ["file%i.txt" % i for i in range(0, files_per_stream)]
 416         for name in file_names:
 417             self.assertFalse(name in updated_collection['manifest_text'])
 418
 419         updated_collection = self.api.collections().get(uuid=collection1.manifest_locator()).execute()
 420         for name in file_names:
 421             self.assertTrue(name in updated_collection['manifest_text'])
 422
 423
 424 # Move one file at a time from one collection into another
 425 class UsingMagicDir_CreateCollectionWithManyFilesAndMoveEachFileIntoAnother(MountTestBase):
 426     def setUp(self):
 427         super(UsingMagicDir_CreateCollectionWithManyFilesAndMoveEachFileIntoAnother, self).setUp()
 428
 429     @profiled
 430     def magicDirTestMoveFiles_createCollectionWithManyFiles(self, streams=0, files_per_stream=0, data='x'):
 431         # Create collection
 432         collection = arvados.collection.Collection(api_client=self.api)
 433         for j in range(0, files_per_stream):
 434             with collection.open("file"+str(j)+".txt", "w") as f:
 435                 f.write(data)
 436         collection.save_new()
 437         return collection
 438
 439     def magicDirTestMoveFiles_oneEachIntoAnother(self, from_collection, to_collection, files_per_stream):
 440         for j in range(0, files_per_stream):
 441             self.pool.apply(magicDirTest_MoveFileFromCollection, (self.mounttmp, from_collection.manifest_locator(),
 442                   to_collection.manifest_locator(), 'stream0', 'file'+str(j)+'.txt',))
 443
 444     @slow_test
 445     def test_UsingMagicDirCreateCollectionWithManyFilesAndMoveEachFileIntoAnother(self):
 446         streams = 2
 447         files_per_stream = 200
 448         data = 'x'
 449
 450         collection1 = self.magicDirTestMoveFiles_createCollectionWithManyFiles()
 451         # Create collection with multiple files
 452         collection2 = self.magicDirTestMoveFiles_createCollectionWithManyFiles(streams, files_per_stream, data)
 453
 454         # Mount FuseMagicDir
 455         self.make_mount(fuse.MagicDirectory)
 456
 457         # Move all files from collection2 into collection1
 458         self.magicDirTestMoveFiles_oneEachIntoAnother(collection2, collection1, files_per_stream)
 459
 460         updated_collection = self.api.collections().get(uuid=collection2.manifest_locator()).execute()
 461         file_names = ["file%i.txt" % i for i in range(0, files_per_stream)]
 462         for name in file_names:
 463             self.assertFalse(name in updated_collection['manifest_text'])
 464
 465         updated_collection = self.api.collections().get(uuid=collection1.manifest_locator()).execute()
 466         for name in file_names:
 467             self.assertTrue(name in updated_collection['manifest_text'])
 468
 469 class FuseListLargeProjectContents(MountTestBase):
 470     @profiled
 471     def getProjectWithManyCollections(self):
 472         project_contents = llfuse.listdir(self.mounttmp)
 473         self.assertEqual(201, len(project_contents))
 474         self.assertIn('Collection_1', project_contents)
 475
 476     @profiled
 477     def listContentsInProjectWithManyCollections(self):
 478         project_contents = llfuse.listdir(self.mounttmp)
 479         self.assertEqual(201, len(project_contents))
 480         self.assertIn('Collection_1', project_contents)
 481
 482         for collection_name in project_contents:
 483             collection_contents = llfuse.listdir(os.path.join(self.mounttmp, collection_name))
 484             self.assertIn('baz', collection_contents)
 485
 486     @slow_test
 487     def test_listLargeProjectContents(self):
 488         self.make_mount(fuse.ProjectDirectory,
 489                         project_object=run_test_server.fixture('groups')['project_with_201_collections'])
 490         self.getProjectWithManyCollections()
 491         self.listContentsInProjectWithManyCollections()