doc/user/cwl/federated/federated.cwl

   1 cwlVersion: v1.0
   2 class: Workflow
   3 $namespaces:
   4   arv: "http://arvados.org/cwl#"
   5 requirements:
   6   InlineJavascriptRequirement: {}
   7   DockerRequirement:
   8     dockerPull: arvados/fed-test:scatter-gather
   9   ScatterFeatureRequirement: {}
  10   StepInputExpressionRequirement: {}
  11   SchemaDefRequirement:
  12     types:
  13       - name: FileOnCluster
  14         type: record
  15         fields:
  16           file: File
  17           cluster: string
  18           project: string
  19 inputs:
  20   shards:
  21     type:
  22       type: array
  23       items: FileOnCluster
  24 outputs:
  25   joined:
  26     type: File
  27     outputSource: gather-results/joined
  28 steps:
  29   distributed-analysis:
  30     in:
  31       shards: shards
  32       inp: {valueFrom: $(inputs.shards.file)}
  33     scatter: shards
  34     hints:
  35       arv:ClusterTarget:
  36         cluster_id: $(inputs.shards.cluster)
  37         project_uuid: $(inputs.shards.project)
  38     out: [out]
  39     run: md5sum.cwl
  40   gather-results:
  41     in:
  42       inp: distributed-analysis/out
  43     out: [joined]
  44     run: cat.cwl