sdk/cwl/tests/arvados-tests.yml

   1 # Copyright (C) The Arvados Authors. All rights reserved.
   2 #
   3 # SPDX-License-Identifier: Apache-2.0
   4
   5 - job: dir-job.yml
   6   output:
   7     "outlist": {
   8         "size": 20,
   9         "location": "output.txt",
  10         "class": "File",
  11         "checksum": "sha1$13cda8661796ae241da3a18668fb552161a72592"
  12     }
  13   tool: keep-dir-test-input.cwl
  14   doc: Test directory in keep
  15
  16 - job: dir-job2.yml
  17   output:
  18     "outlist": {
  19         "size": 20,
  20         "location": "output.txt",
  21         "class": "File",
  22         "checksum": "sha1$13cda8661796ae241da3a18668fb552161a72592"
  23     }
  24   tool: keep-dir-test-input.cwl
  25   doc: Test directory in keep
  26
  27 - job: null
  28   output:
  29     "outlist": {
  30         "size": 20,
  31         "location": "output.txt",
  32         "class": "File",
  33         "checksum": "sha1$13cda8661796ae241da3a18668fb552161a72592"
  34     }
  35   tool: keep-dir-test-input2.cwl
  36   doc: Test default directory in keep
  37
  38 - job: null
  39   output:
  40     "outlist": {
  41         "size": 20,
  42         "location": "output.txt",
  43         "class": "File",
  44         "checksum": "sha1$13cda8661796ae241da3a18668fb552161a72592"
  45     }
  46   tool: keep-dir-test-input3.cwl
  47   doc: Test default directory in keep
  48
  49 - job: octo.yml
  50   output: {}
  51   tool: cat.cwl
  52   doc: Test hashes in filenames
  53
  54 - job: listing-job.yml
  55   output: {
  56     "out": {
  57         "class": "File",
  58         "location": "output.txt",
  59         "size": 5,
  60         "checksum": "sha1$724ba28f4a9a1b472057ff99511ed393a45552e1"
  61     }
  62   }
  63   tool: wf/listing_shallow.cwl
  64   doc: test shallow directory listing
  65
  66 - job: listing-job.yml
  67   output: {
  68     "out": {
  69         "class": "File",
  70         "location": "output.txt",
  71         "size": 5,
  72         "checksum": "sha1$724ba28f4a9a1b472057ff99511ed393a45552e1"
  73     }
  74   }
  75   tool: wf/listing_none.cwl
  76   doc: test no directory listing
  77
  78 - job: listing-job.yml
  79   output: {
  80     "out": {
  81         "class": "File",
  82         "location": "output.txt",
  83         "size": 5,
  84         "checksum": "sha1$724ba28f4a9a1b472057ff99511ed393a45552e1"
  85     }
  86   }
  87   tool: wf/listing_deep.cwl
  88   doc: test deep directory listing
  89
  90 - job: null
  91   output: {}
  92   tool: noreuse.cwl
  93   doc: "Test arv:ReuseRequirement"
  94
  95 - job: 12213-keepref-job.yml
  96   output: {
  97     "out": [
  98         {
  99             "checksum": "sha1$1c78028c0d69163391eef89316b44a57bde3fead",
 100             "location": "sample1_S01_R1_001.fastq.txt",
 101             "class": "File",
 102             "size": 32
 103         },
 104         {
 105             "checksum": "sha1$83483b9c65d99967aecc794c14f9f4743314d186",
 106             "location": "sample2_S01_R3_001.fastq.txt",
 107             "class": "File",
 108             "size": 32
 109         }
 110     ]
 111   }
 112   tool: 12213-keepref-wf.cwl
 113   doc: "Test manipulating keep references with expression tools"
 114
 115 - job: null
 116   output:
 117     out: null
 118   tool: 12418-glob-empty-collection.cwl
 119   doc: "Test glob output on empty collection"
 120
 121 - job: null
 122   output:
 123     out: out
 124   tool: wf/runin-wf.cwl
 125   doc: "RunInSingleContainer cwl.input.json needs to be consistent with pathmapper manipulations"
 126
 127 - job: secondary/wf-job.yml
 128   output: {}
 129   tool: secondary/wf.cwl
 130   doc: "RunInSingleContainer applies secondaryFile discovery & manipulation before generating cwl.input.yml"