sdk/cwl/tests/test_job.py

   1 # Copyright (C) The Arvados Authors. All rights reserved.
   2 #
   3 # SPDX-License-Identifier: Apache-2.0
   4
   5 import functools
   6 import json
   7 import logging
   8 import mock
   9 import os
  10 import unittest
  11 import copy
  12 import StringIO
  13
  14 import arvados
  15 import arvados_cwl
  16 import cwltool.process
  17 from arvados.errors import ApiError
  18 from schema_salad.ref_resolver import Loader
  19 from schema_salad.sourceline import cmap
  20 from .mock_discovery import get_rootDesc
  21 from .matcher import JsonDiffMatcher, StripYAMLComments
  22
  23 if not os.getenv('ARVADOS_DEBUG'):
  24     logging.getLogger('arvados.cwl-runner').setLevel(logging.WARN)
  25     logging.getLogger('arvados.arv-run').setLevel(logging.WARN)
  26
  27 class TestJob(unittest.TestCase):
  28
  29     # The test passes no builder.resources
  30     # Hence the default resources will apply: {'cores': 1, 'ram': 1024, 'outdirSize': 1024, 'tmpdirSize': 1024}
  31     @mock.patch('arvados.commands.keepdocker.list_images_in_arv')
  32     def test_run(self, list_images_in_arv):
  33         for enable_reuse in (True, False):
  34             runner = mock.MagicMock()
  35             runner.project_uuid = "zzzzz-8i9sb-zzzzzzzzzzzzzzz"
  36             runner.ignore_docker_for_reuse = False
  37             runner.num_retries = 0
  38             document_loader, avsc_names, schema_metadata, metaschema_loader = cwltool.process.get_schema("v1.0")
  39
  40             list_images_in_arv.return_value = [["zzzzz-4zz18-zzzzzzzzzzzzzzz"]]
  41             runner.api.collections().get().execute.return_value = {"portable_data_hash": "99999999999999999999999999999993+99"}
  42             # Simulate reused job from another project so that we can check is a can_read
  43             # link is added.
  44             runner.api.jobs().create().execute.return_value = {
  45                 'state': 'Complete' if enable_reuse else 'Queued',
  46                 'owner_uuid': 'zzzzz-tpzed-yyyyyyyyyyyyyyy' if enable_reuse else 'zzzzz-8i9sb-zzzzzzzzzzzzzzz',
  47                 'uuid': 'zzzzz-819sb-yyyyyyyyyyyyyyy',
  48                 'output': None,
  49             }
  50
  51             tool = cmap({
  52                 "inputs": [],
  53                 "outputs": [],
  54                 "baseCommand": "ls",
  55                 "arguments": [{"valueFrom": "$(runtime.outdir)"}],
  56                 "id": "#",
  57                 "class": "CommandLineTool"
  58             })
  59             make_fs_access=functools.partial(arvados_cwl.CollectionFsAccess,
  60                                          collection_cache=arvados_cwl.CollectionCache(runner.api, None, 0))
  61             arvtool = arvados_cwl.ArvadosCommandTool(runner, tool, work_api="jobs", avsc_names=avsc_names,
  62                                                      basedir="", make_fs_access=make_fs_access, loader=Loader({}),
  63                                                      metadata={"cwlVersion": "v1.0"})
  64             arvtool.formatgraph = None
  65             for j in arvtool.job({}, mock.MagicMock(), basedir="", make_fs_access=make_fs_access):
  66                 j.run(enable_reuse=enable_reuse)
  67                 runner.api.jobs().create.assert_called_with(
  68                     body=JsonDiffMatcher({
  69                         'owner_uuid': 'zzzzz-8i9sb-zzzzzzzzzzzzzzz',
  70                         'runtime_constraints': {},
  71                         'script_parameters': {
  72                             'tasks': [{
  73                                 'task.env': {'HOME': '$(task.outdir)', 'TMPDIR': '$(task.tmpdir)'},
  74                                 'command': ['ls', '$(task.outdir)']
  75                             }],
  76                         },
  77                         'script_version': 'master',
  78                         'minimum_script_version': 'a3f2cb186e437bfce0031b024b2157b73ed2717d',
  79                         'repository': 'arvados',
  80                         'script': 'crunchrunner',
  81                         'runtime_constraints': {
  82                             'docker_image': 'arvados/jobs',
  83                             'min_cores_per_node': 1,
  84                             'min_ram_mb_per_node': 1024,
  85                             'min_scratch_mb_per_node': 2048 # tmpdirSize + outdirSize
  86                         }
  87                     }),
  88                     find_or_create=enable_reuse,
  89                     filters=[['repository', '=', 'arvados'],
  90                              ['script', '=', 'crunchrunner'],
  91                              ['script_version', 'in git', 'a3f2cb186e437bfce0031b024b2157b73ed2717d'],
  92                              ['docker_image_locator', 'in docker', 'arvados/jobs']]
  93                 )
  94                 if enable_reuse:
  95                     runner.api.links().create.assert_called_with(
  96                         body=JsonDiffMatcher({
  97                             'link_class': 'permission',
  98                             'name': 'can_read',
  99                             "tail_uuid": "zzzzz-8i9sb-zzzzzzzzzzzzzzz",
 100                             "head_uuid": "zzzzz-819sb-yyyyyyyyyyyyyyy",
 101                         })
 102                     )
 103                     # Simulate an API excepction when trying to create a
 104                     # sharing link on the job
 105                     runner.api.links().create.side_effect = ApiError(
 106                         mock.MagicMock(return_value={'status': 403}),
 107                         'Permission denied')
 108                     j.run(enable_reuse=enable_reuse)
 109                 else:
 110                     assert not runner.api.links().create.called
 111
 112     # The test passes some fields in builder.resources
 113     # For the remaining fields, the defaults will apply: {'cores': 1, 'ram': 1024, 'outdirSize': 1024, 'tmpdirSize': 1024}
 114     @mock.patch('arvados.commands.keepdocker.list_images_in_arv')
 115     def test_resource_requirements(self, list_images_in_arv):
 116         runner = mock.MagicMock()
 117         runner.project_uuid = "zzzzz-8i9sb-zzzzzzzzzzzzzzz"
 118         runner.ignore_docker_for_reuse = False
 119         runner.num_retries = 0
 120         arvados_cwl.add_arv_hints()
 121
 122         list_images_in_arv.return_value = [["zzzzz-4zz18-zzzzzzzzzzzzzzz"]]
 123         runner.api.collections().get().execute.return_vaulue = {"portable_data_hash": "99999999999999999999999999999993+99"}
 124
 125         document_loader, avsc_names, schema_metadata, metaschema_loader = cwltool.process.get_schema("v1.0")
 126
 127
 128         tool = {
 129             "inputs": [],
 130             "outputs": [],
 131             "hints": [{
 132                 "class": "ResourceRequirement",
 133                 "coresMin": 3,
 134                 "ramMin": 3000,
 135                 "tmpdirMin": 4000
 136             }, {
 137                 "class": "http://arvados.org/cwl#RuntimeConstraints",
 138                 "keep_cache": 512,
 139                 "outputDirType": "keep_output_dir"
 140             }, {
 141                 "class": "http://arvados.org/cwl#APIRequirement",
 142             },
 143             {
 144                 "class": "http://arvados.org/cwl#ReuseRequirement",
 145                 "enableReuse": False
 146             }],
 147             "baseCommand": "ls",
 148             "id": "#",
 149             "class": "CommandLineTool"
 150         }
 151         make_fs_access=functools.partial(arvados_cwl.CollectionFsAccess,
 152                                          collection_cache=arvados_cwl.CollectionCache(runner.api, None, 0))
 153         arvtool = arvados_cwl.ArvadosCommandTool(runner, tool, work_api="jobs", avsc_names=avsc_names,
 154                                                  make_fs_access=make_fs_access, loader=Loader({}),
 155                                                  metadata={"cwlVersion": "v1.0"})
 156         arvtool.formatgraph = None
 157         for j in arvtool.job({}, mock.MagicMock(), basedir="", make_fs_access=make_fs_access):
 158             j.run(enable_reuse=True)
 159         runner.api.jobs().create.assert_called_with(
 160             body=JsonDiffMatcher({
 161                 'owner_uuid': 'zzzzz-8i9sb-zzzzzzzzzzzzzzz',
 162                 'runtime_constraints': {},
 163                 'script_parameters': {
 164                     'tasks': [{
 165                         'task.env': {'HOME': '$(task.outdir)', 'TMPDIR': '$(task.tmpdir)'},
 166                         'task.keepTmpOutput': True,
 167                         'command': ['ls']
 168                     }]
 169             },
 170             'script_version': 'master',
 171                 'minimum_script_version': 'a3f2cb186e437bfce0031b024b2157b73ed2717d',
 172                 'repository': 'arvados',
 173                 'script': 'crunchrunner',
 174                 'runtime_constraints': {
 175                     'docker_image': 'arvados/jobs',
 176                     'min_cores_per_node': 3,
 177                     'min_ram_mb_per_node': 3512,     # ramMin + keep_cache
 178                     'min_scratch_mb_per_node': 5024, # tmpdirSize + outdirSize
 179                     'keep_cache_mb_per_task': 512
 180                 }
 181             }),
 182             find_or_create=False,
 183             filters=[['repository', '=', 'arvados'],
 184                      ['script', '=', 'crunchrunner'],
 185                      ['script_version', 'in git', 'a3f2cb186e437bfce0031b024b2157b73ed2717d'],
 186                      ['docker_image_locator', 'in docker', 'arvados/jobs']])
 187
 188     @mock.patch("arvados.collection.CollectionReader")
 189     def test_done(self, reader):
 190         api = mock.MagicMock()
 191
 192         runner = mock.MagicMock()
 193         runner.api = api
 194         runner.project_uuid = "zzzzz-8i9sb-zzzzzzzzzzzzzzz"
 195         runner.num_retries = 0
 196         runner.ignore_docker_for_reuse = False
 197
 198         reader().open.return_value = StringIO.StringIO(
 199             """2016-11-02_23:12:18 c97qk-8i9sb-cryqw2blvzy4yaj 13358 0 stderr 2016/11/02 23:12:18 crunchrunner: $(task.tmpdir)=/tmp/crunch-job-task-work/compute3.1/tmpdir
 200 2016-11-02_23:12:18 c97qk-8i9sb-cryqw2blvzy4yaj 13358 0 stderr 2016/11/02 23:12:18 crunchrunner: $(task.outdir)=/tmp/crunch-job-task-work/compute3.1/outdir
 201 2016-11-02_23:12:18 c97qk-8i9sb-cryqw2blvzy4yaj 13358 0 stderr 2016/11/02 23:12:18 crunchrunner: $(task.keep)=/keep
 202         """)
 203         api.collections().list().execute.side_effect = ({"items": []},
 204                                                         {"items": [{"manifest_text": "XYZ"}]},
 205                                                         {"items": []},
 206                                                         {"items": [{"manifest_text": "ABC"}]})
 207
 208         arvjob = arvados_cwl.ArvadosJob(runner)
 209         arvjob.name = "testjob"
 210         arvjob.builder = mock.MagicMock()
 211         arvjob.output_callback = mock.MagicMock()
 212         arvjob.collect_outputs = mock.MagicMock()
 213         arvjob.collect_outputs.return_value = {"out": "stuff"}
 214
 215         arvjob.done({
 216             "state": "Complete",
 217             "output": "99999999999999999999999999999993+99",
 218             "log": "99999999999999999999999999999994+99",
 219             "uuid": "zzzzz-8i9sb-zzzzzzzzzzzzzzz"
 220         })
 221
 222         api.collections().list.assert_has_calls([
 223             mock.call(),
 224             # Output collection check
 225             mock.call(filters=[['owner_uuid', '=', 'zzzzz-8i9sb-zzzzzzzzzzzzzzz'],
 226                           ['portable_data_hash', '=', '99999999999999999999999999999993+99'],
 227                           ['name', '=', 'Output 9999999 of testjob']]),
 228             mock.call().execute(num_retries=0),
 229             mock.call(limit=1, filters=[['portable_data_hash', '=', '99999999999999999999999999999993+99']],
 230                  select=['manifest_text']),
 231             mock.call().execute(num_retries=0),
 232             # Log collection's turn
 233             mock.call(filters=[['owner_uuid', '=', 'zzzzz-8i9sb-zzzzzzzzzzzzzzz'],
 234                           ['portable_data_hash', '=', '99999999999999999999999999999994+99'],
 235                           ['name', '=', 'Log of zzzzz-8i9sb-zzzzzzzzzzzzzzz']]),
 236             mock.call().execute(num_retries=0),
 237             mock.call(limit=1, filters=[['portable_data_hash', '=', '99999999999999999999999999999994+99']],
 238                  select=['manifest_text']),
 239             mock.call().execute(num_retries=0)])
 240
 241         api.collections().create.assert_has_calls([
 242             mock.call(ensure_unique_name=True,
 243                       body={'portable_data_hash': '99999999999999999999999999999993+99',
 244                             'manifest_text': 'XYZ',
 245                             'owner_uuid': 'zzzzz-8i9sb-zzzzzzzzzzzzzzz',
 246                             'name': 'Output 9999999 of testjob'}),
 247             mock.call().execute(num_retries=0),
 248             mock.call(ensure_unique_name=True,
 249                       body={'portable_data_hash': '99999999999999999999999999999994+99',
 250                             'manifest_text': 'ABC',
 251                             'owner_uuid': 'zzzzz-8i9sb-zzzzzzzzzzzzzzz',
 252                             'name': 'Log of zzzzz-8i9sb-zzzzzzzzzzzzzzz'}),
 253             mock.call().execute(num_retries=0),
 254         ])
 255
 256         arvjob.output_callback.assert_called_with({"out": "stuff"}, "success")
 257
 258     @mock.patch("arvados.collection.CollectionReader")
 259     def test_done_use_existing_collection(self, reader):
 260         api = mock.MagicMock()
 261
 262         runner = mock.MagicMock()
 263         runner.api = api
 264         runner.project_uuid = "zzzzz-8i9sb-zzzzzzzzzzzzzzz"
 265         runner.num_retries = 0
 266
 267         reader().open.return_value = StringIO.StringIO(
 268             """2016-11-02_23:12:18 c97qk-8i9sb-cryqw2blvzy4yaj 13358 0 stderr 2016/11/02 23:12:18 crunchrunner: $(task.tmpdir)=/tmp/crunch-job-task-work/compute3.1/tmpdir
 269 2016-11-02_23:12:18 c97qk-8i9sb-cryqw2blvzy4yaj 13358 0 stderr 2016/11/02 23:12:18 crunchrunner: $(task.outdir)=/tmp/crunch-job-task-work/compute3.1/outdir
 270 2016-11-02_23:12:18 c97qk-8i9sb-cryqw2blvzy4yaj 13358 0 stderr 2016/11/02 23:12:18 crunchrunner: $(task.keep)=/keep
 271         """)
 272
 273         api.collections().list().execute.side_effect = (
 274             {"items": [{"uuid": "zzzzz-4zz18-zzzzzzzzzzzzzz2"}]},
 275             {"items": [{"uuid": "zzzzz-4zz18-zzzzzzzzzzzzzz2"}]},
 276         )
 277
 278         arvjob = arvados_cwl.ArvadosJob(runner)
 279         arvjob.name = "testjob"
 280         arvjob.builder = mock.MagicMock()
 281         arvjob.output_callback = mock.MagicMock()
 282         arvjob.collect_outputs = mock.MagicMock()
 283         arvjob.collect_outputs.return_value = {"out": "stuff"}
 284
 285         arvjob.done({
 286             "state": "Complete",
 287             "output": "99999999999999999999999999999993+99",
 288             "log": "99999999999999999999999999999994+99",
 289             "uuid": "zzzzz-8i9sb-zzzzzzzzzzzzzzz"
 290         })
 291
 292         api.collections().list.assert_has_calls([
 293             mock.call(),
 294             # Output collection
 295             mock.call(filters=[['owner_uuid', '=', 'zzzzz-8i9sb-zzzzzzzzzzzzzzz'],
 296                                ['portable_data_hash', '=', '99999999999999999999999999999993+99'],
 297                                ['name', '=', 'Output 9999999 of testjob']]),
 298             mock.call().execute(num_retries=0),
 299             # Log collection
 300             mock.call(filters=[['owner_uuid', '=', 'zzzzz-8i9sb-zzzzzzzzzzzzzzz'],
 301                                ['portable_data_hash', '=', '99999999999999999999999999999994+99'],
 302                                ['name', '=', 'Log of zzzzz-8i9sb-zzzzzzzzzzzzzzz']]),
 303             mock.call().execute(num_retries=0)
 304         ])
 305
 306         self.assertFalse(api.collections().create.called)
 307
 308         arvjob.output_callback.assert_called_with({"out": "stuff"}, "success")
 309
 310
 311 class TestWorkflow(unittest.TestCase):
 312     # The test passes no builder.resources
 313     # Hence the default resources will apply: {'cores': 1, 'ram': 1024, 'outdirSize': 1024, 'tmpdirSize': 1024}
 314     @mock.patch("arvados.collection.CollectionReader")
 315     @mock.patch("arvados.collection.Collection")
 316     @mock.patch('arvados.commands.keepdocker.list_images_in_arv')
 317     def test_run(self, list_images_in_arv, mockcollection, mockcollectionreader):
 318         arvados_cwl.add_arv_hints()
 319
 320         api = mock.MagicMock()
 321         api._rootDesc = get_rootDesc()
 322
 323         runner = arvados_cwl.ArvCwlRunner(api)
 324         self.assertEqual(runner.work_api, 'jobs')
 325
 326         list_images_in_arv.return_value = [["zzzzz-4zz18-zzzzzzzzzzzzzzz"]]
 327         runner.api.collections().get().execute.return_vaulue = {"portable_data_hash": "99999999999999999999999999999993+99"}
 328         runner.api.collections().list().execute.return_vaulue = {"items": [{"portable_data_hash": "99999999999999999999999999999993+99"}]}
 329
 330         runner.project_uuid = "zzzzz-8i9sb-zzzzzzzzzzzzzzz"
 331         runner.ignore_docker_for_reuse = False
 332         runner.num_retries = 0
 333         document_loader, avsc_names, schema_metadata, metaschema_loader = cwltool.process.get_schema("v1.0")
 334
 335         make_fs_access=functools.partial(arvados_cwl.CollectionFsAccess,
 336                                          collection_cache=arvados_cwl.CollectionCache(runner.api, None, 0))
 337         document_loader.fetcher_constructor = functools.partial(arvados_cwl.CollectionFetcher, api_client=api, fs_access=make_fs_access(""))
 338         document_loader.fetcher = document_loader.fetcher_constructor(document_loader.cache, document_loader.session)
 339         document_loader.fetch_text = document_loader.fetcher.fetch_text
 340         document_loader.check_exists = document_loader.fetcher.check_exists
 341
 342         tool, metadata = document_loader.resolve_ref("tests/wf/scatter2.cwl")
 343         metadata["cwlVersion"] = tool["cwlVersion"]
 344
 345         mockcollection().portable_data_hash.return_value = "99999999999999999999999999999999+118"
 346
 347         arvtool = arvados_cwl.ArvadosWorkflow(runner, tool, work_api="jobs", avsc_names=avsc_names,
 348                                               basedir="", make_fs_access=make_fs_access, loader=document_loader,
 349                                               makeTool=runner.arv_make_tool, metadata=metadata)
 350         arvtool.formatgraph = None
 351         it = arvtool.job({}, mock.MagicMock(), basedir="", make_fs_access=make_fs_access, tmp_outdir_prefix="")
 352         it.next().run()
 353         it.next().run()
 354
 355         with open("tests/wf/scatter2_subwf.cwl") as f:
 356             subwf = StripYAMLComments(f.read())
 357
 358         runner.api.jobs().create.assert_called_with(
 359             body=JsonDiffMatcher({
 360                 'minimum_script_version': 'a3f2cb186e437bfce0031b024b2157b73ed2717d',
 361                 'repository': 'arvados',
 362                 'script_version': 'master',
 363                 'script': 'crunchrunner',
 364                 'script_parameters': {
 365                     'tasks': [{'task.env': {
 366                         'HOME': '$(task.outdir)',
 367                         'TMPDIR': '$(task.tmpdir)'},
 368                                'task.vwd': {
 369                                    'workflow.cwl': '$(task.keep)/99999999999999999999999999999999+118/workflow.cwl',
 370                                    'cwl.input.yml': '$(task.keep)/99999999999999999999999999999999+118/cwl.input.yml'
 371                                },
 372                     'command': [u'cwltool', u'--no-container', u'--move-outputs', u'--preserve-entire-environment', u'workflow.cwl#main', u'cwl.input.yml'],
 373                     'task.stdout': 'cwl.output.json'}]},
 374                 'runtime_constraints': {
 375                     'min_scratch_mb_per_node': 2048,
 376                     'min_cores_per_node': 1,
 377                     'docker_image': 'arvados/jobs',
 378                     'min_ram_mb_per_node': 1024
 379                 },
 380                 'owner_uuid': 'zzzzz-8i9sb-zzzzzzzzzzzzzzz'}),
 381             filters=[['repository', '=', 'arvados'],
 382                      ['script', '=', 'crunchrunner'],
 383                      ['script_version', 'in git', 'a3f2cb186e437bfce0031b024b2157b73ed2717d'],
 384                      ['docker_image_locator', 'in docker', 'arvados/jobs']],
 385             find_or_create=True)
 386
 387         mockcollection().open().__enter__().write.assert_has_calls([mock.call(subwf)])
 388         mockcollection().open().__enter__().write.assert_has_calls([mock.call(
 389 '''{
 390   "fileblub": {
 391     "basename": "token.txt",
 392     "class": "File",
 393     "location": "/keep/99999999999999999999999999999999+118/token.txt"
 394   },
 395   "sleeptime": 5
 396 }''')])
 397
 398     # The test passes no builder.resources
 399     # Hence the default resources will apply: {'cores': 1, 'ram': 1024, 'outdirSize': 1024, 'tmpdirSize': 1024}
 400     @mock.patch("arvados.collection.CollectionReader")
 401     @mock.patch("arvados.collection.Collection")
 402     @mock.patch('arvados.commands.keepdocker.list_images_in_arv')
 403     def test_overall_resource_singlecontainer(self, list_images_in_arv, mockcollection, mockcollectionreader):
 404         arvados_cwl.add_arv_hints()
 405
 406         api = mock.MagicMock()
 407         api._rootDesc = get_rootDesc()
 408
 409         runner = arvados_cwl.ArvCwlRunner(api)
 410         self.assertEqual(runner.work_api, 'jobs')
 411
 412         list_images_in_arv.return_value = [["zzzzz-4zz18-zzzzzzzzzzzzzzz"]]
 413         runner.api.collections().get().execute.return_vaulue = {"portable_data_hash": "99999999999999999999999999999993+99"}
 414         runner.api.collections().list().execute.return_vaulue = {"items": [{"portable_data_hash": "99999999999999999999999999999993+99"}]}
 415
 416         runner.project_uuid = "zzzzz-8i9sb-zzzzzzzzzzzzzzz"
 417         runner.ignore_docker_for_reuse = False
 418         runner.num_retries = 0
 419         document_loader, avsc_names, schema_metadata, metaschema_loader = cwltool.process.get_schema("v1.0")
 420
 421         make_fs_access=functools.partial(arvados_cwl.CollectionFsAccess,
 422                                          collection_cache=arvados_cwl.CollectionCache(runner.api, None, 0))
 423         document_loader.fetcher_constructor = functools.partial(arvados_cwl.CollectionFetcher, api_client=api, fs_access=make_fs_access(""))
 424         document_loader.fetcher = document_loader.fetcher_constructor(document_loader.cache, document_loader.session)
 425         document_loader.fetch_text = document_loader.fetcher.fetch_text
 426         document_loader.check_exists = document_loader.fetcher.check_exists
 427
 428         tool, metadata = document_loader.resolve_ref("tests/wf/echo-wf.cwl")
 429         metadata["cwlVersion"] = tool["cwlVersion"]
 430
 431         mockcollection().portable_data_hash.return_value = "99999999999999999999999999999999+118"
 432
 433         arvtool = arvados_cwl.ArvadosWorkflow(runner, tool, work_api="jobs", avsc_names=avsc_names,
 434                                               basedir="", make_fs_access=make_fs_access, loader=document_loader,
 435                                               makeTool=runner.arv_make_tool, metadata=metadata)
 436         arvtool.formatgraph = None
 437         it = arvtool.job({}, mock.MagicMock(), basedir="", make_fs_access=make_fs_access, tmp_outdir_prefix="")
 438         it.next().run()
 439         it.next().run()
 440
 441         with open("tests/wf/echo-subwf.cwl") as f:
 442             subwf = StripYAMLComments(f.read())
 443
 444         runner.api.jobs().create.assert_called_with(
 445             body=JsonDiffMatcher({
 446                 'minimum_script_version': 'a3f2cb186e437bfce0031b024b2157b73ed2717d',
 447                 'repository': 'arvados',
 448                 'script_version': 'master',
 449                 'script': 'crunchrunner',
 450                 'script_parameters': {
 451                     'tasks': [{'task.env': {
 452                         'HOME': '$(task.outdir)',
 453                         'TMPDIR': '$(task.tmpdir)'},
 454                                'task.vwd': {
 455                                    'workflow.cwl': '$(task.keep)/99999999999999999999999999999999+118/workflow.cwl',
 456                                    'cwl.input.yml': '$(task.keep)/99999999999999999999999999999999+118/cwl.input.yml'
 457                                },
 458                     'command': [u'cwltool', u'--no-container', u'--move-outputs', u'--preserve-entire-environment', u'workflow.cwl#main', u'cwl.input.yml'],
 459                     'task.stdout': 'cwl.output.json'}]},
 460                 'runtime_constraints': {
 461                     'min_scratch_mb_per_node': 4096,
 462                     'min_cores_per_node': 3,
 463                     'docker_image': 'arvados/jobs',
 464                     'min_ram_mb_per_node': 1024
 465                 },
 466                 'owner_uuid': 'zzzzz-8i9sb-zzzzzzzzzzzzzzz'}),
 467             filters=[['repository', '=', 'arvados'],
 468                      ['script', '=', 'crunchrunner'],
 469                      ['script_version', 'in git', 'a3f2cb186e437bfce0031b024b2157b73ed2717d'],
 470                      ['docker_image_locator', 'in docker', 'arvados/jobs']],
 471             find_or_create=True)
 472
 473     def test_default_work_api(self):
 474         arvados_cwl.add_arv_hints()
 475
 476         api = mock.MagicMock()
 477         api._rootDesc = copy.deepcopy(get_rootDesc())
 478         del api._rootDesc.get('resources')['jobs']['methods']['create']
 479         runner = arvados_cwl.ArvCwlRunner(api)
 480         self.assertEqual(runner.work_api, 'containers')