2 # Copyright (C) The Arvados Authors. All rights reserved.
4 # SPDX-License-Identifier: AGPL-3.0
7 . `dirname "$(readlink -f "$0")"`/run-library.sh
9 read -rd "\000" helpmessage <<EOF
10 $(basename $0): Install and test Arvados components.
12 Exit non-zero if any tests fail.
15 $(basename $0) WORKSPACE=/path/to/arvados [options]
19 --skip FOO Do not test the FOO component.
20 --skip sanity Skip initial dev environment sanity checks.
21 --skip install Do not run any install steps. Just run tests.
22 You should provide GOPATH, GEMHOME, and VENVDIR options
23 from a previous invocation if you use this option.
24 --only FOO Do not test anything except the FOO component.
25 --temp DIR Install components and dependencies under DIR instead of
26 making a new temporary directory. Implies --leave-temp.
27 --leave-temp Do not remove GOPATH, virtualenv, and other temp dirs at exit.
28 Instead, show the path to give as --temp to reuse them in
29 subsequent invocations.
30 --repeat N Repeat each install/test step until it succeeds N times.
31 --retry Prompt to retry if an install or test suite fails.
32 --only-install Run specific install step
33 --short Skip (or scale down) some slow tests.
34 --interactive Set up, then prompt for test/install steps to perform.
35 WORKSPACE=path Arvados source tree to test.
36 CONFIGSRC=path Dir with config.yml file containing PostgreSQL section for use by tests.
37 services/api_test="TEST=test/functional/arvados/v1/collections_controller_test.rb"
38 Restrict apiserver tests to the given file
39 sdk/python_test="--test-suite tests.test_keep_locator"
40 Restrict Python SDK tests to the given class
41 apps/workbench_test="TEST=test/integration/pipeline_instances_test.rb"
42 Restrict Workbench tests to the given file
43 services/arv-git-httpd_test="-check.vv"
44 Show all log messages, even when tests pass (also works
45 with services/keepstore_test etc.)
47 Print more debug messages
48 envvar=value Set \$envvar to value. Primarily useful for WORKSPACE,
49 *_test, and other examples shown above.
51 Assuming "--skip install" is not given, all components are installed
52 into \$GOPATH, \$VENDIR, and \$GEMHOME before running any tests. Many
53 test suites depend on other components being installed, and installing
54 everything tends to be quicker than debugging dependencies.
56 As a special concession to the current CI server config, CONFIGSRC
57 defaults to $HOME/arvados-api-server if that directory exists.
59 More information and background:
61 https://arvados.org/projects/arvados/wiki/Running_tests
66 apps/workbench_units (*)
67 apps/workbench_functionals (*)
68 apps/workbench_integration (*)
69 apps/workbench_benchmark
70 apps/workbench_profile
77 lib/controller/federation
78 lib/controller/railsproxy
87 lib/dispatchcloud/container
88 lib/dispatchcloud/scheduler
89 lib/dispatchcloud/sshexecutor
90 lib/dispatchcloud/worker
95 services/arv-git-httpd
97 services/dockercleaner
104 services/keep-balance
106 services/crunch-dispatch-local
107 services/crunch-dispatch-slurm
129 tools/crunchstat-summary
130 tools/crunchstat-summary:py3
133 tools/keep-block-check
135 (*) apps/workbench is shorthand for apps/workbench_units +
136 apps/workbench_functionals + apps/workbench_integration
140 # First make sure to remove any ARVADOS_ variables from the calling
141 # environment that could interfere with the tests.
142 unset $(env | cut -d= -f1 | grep \^ARVADOS_)
144 # Reset other variables that could affect our [tests'] behavior by
154 export LANG=en_US.UTF-8
162 if [[ -z "$temp" ]]; then
163 # we did not even get as far as making a temp dir
165 elif [[ -z "$temp_preserve" ]]; then
166 # Go creates readonly dirs in the module cache, which cause
167 # "rm -rf" to fail unless we chmod first.
171 echo "Leaving behind temp dirs in $temp"
177 echo >&2 "Fatal: $* (encountered in ${FUNCNAME[1]} at ${BASH_SOURCE[1]} line ${BASH_LINENO[0]})"
183 if which create-plot-data-from-log.sh >/dev/null; then
184 create-plot-data-from-log.sh $BUILD_NUMBER "$WORKSPACE/apps/workbench/log/test.log" "$WORKSPACE/apps/workbench/log/"
186 rotate_logfile "$WORKSPACE/apps/workbench/log/" "test.log"
188 rotate_logfile "$WORKSPACE/services/api/log/" "test.log"
195 [[ -n "${skip[sanity]}" ]] && return 0
196 ( [[ -n "$WORKSPACE" ]] && [[ -d "$WORKSPACE/services" ]] ) \
197 || fatal "WORKSPACE environment variable not set to a source directory (see: $0 --help)"
198 [[ -z "$CONFIGSRC" ]] || [[ -s "$CONFIGSRC/config.yml" ]] \
199 || fatal "CONFIGSRC is $CONFIGSRC but '$CONFIGSRC/config.yml' is empty or not found (see: $0 --help)"
200 echo Checking dependencies:
201 echo "locale: ${LANG}"
202 [[ "$(locale charmap)" = "UTF-8" ]] \
203 || fatal "Locale '${LANG}' is broken/missing. Try: echo ${LANG} | sudo tee -a /etc/locale.gen && sudo locale-gen"
206 || fatal "No ruby. Install >=2.1.9 (using rbenv, rvm, or source)"
209 || fatal "No go binary. See http://golang.org/doc/install"
210 [[ $(go version) =~ go1.([0-9]+) ]] && [[ ${BASH_REMATCH[1]} -ge 12 ]] \
211 || fatal "Go >= 1.12 required. See http://golang.org/doc/install"
213 gcc --version | egrep ^gcc \
214 || fatal "No gcc. Try: apt-get install build-essential"
216 find /usr/include -path '*fuse/fuse.h' | egrep --max-count=1 . \
217 || fatal "No fuse/fuse.h. Try: apt-get install libfuse-dev"
219 find /usr/include -path '*gnutls/gnutls.h' | egrep --max-count=1 . \
220 || fatal "No gnutls/gnutls.h. Try: apt-get install libgnutls28-dev"
221 echo -n 'virtualenv: '
222 python3 -m venv -h | egrep --max-count=1 . \
223 || fatal "No virtualenv. Try: apt-get install python3-venv"
224 echo -n 'Python3 pyconfig.h: '
225 find /usr/include -path '*/python3*/pyconfig.h' | egrep --max-count=1 . \
226 || fatal "No Python3 pyconfig.h. Try: apt-get install python3-dev"
228 || fatal "No netstat. Try: apt-get install net-tools"
230 PATH="$PATH:/sbin:/usr/sbin:/usr/local/sbin" nginx -v \
231 || fatal "No nginx. Try: apt-get install nginx"
233 perl -v | grep version \
234 || fatal "No perl. Try: apt-get install perl"
235 for mod in ExtUtils::MakeMaker JSON LWP Net::SSL; do
236 echo -n "perl $mod: "
237 perl -e "use $mod; print \"\$$mod::VERSION\\n\"" \
238 || fatal "No $mod. Try: apt-get install perl-modules libcrypt-ssleay-perl libjson-perl libwww-perl"
242 || fatal "No gitolite. Try: apt-get install gitolite3"
245 || fatal "No npm. Try: wget -O- https://nodejs.org/dist/v10.23.1/node-v10.23.1-linux-x64.tar.xz | sudo tar -C /usr/local -xJf - && sudo ln -s ../node-v10.23.1-linux-x64/bin/{node,npm} /usr/local/bin/"
247 cadaver --version | grep -w cadaver \
248 || fatal "No cadaver. Try: apt-get install cadaver"
249 echo -n 'libattr1 xattr.h: '
250 find /usr/include -path '*/attr/xattr.h' | egrep --max-count=1 . \
251 || fatal "No libattr1 xattr.h. Try: apt-get install libattr1-dev"
252 echo -n 'libcurl curl.h: '
253 find /usr/include -path '*/curl/curl.h' | egrep --max-count=1 . \
254 || fatal "No libcurl curl.h. Try: apt-get install libcurl4-gnutls-dev"
255 echo -n 'libpq libpq-fe.h: '
256 find /usr/include -path '*/postgresql/libpq-fe.h' | egrep --max-count=1 . \
257 || fatal "No libpq libpq-fe.h. Try: apt-get install libpq-dev"
258 echo -n 'libpam pam_appl.h: '
259 find /usr/include -path '*/security/pam_appl.h' | egrep --max-count=1 . \
260 || fatal "No libpam pam_appl.h. Try: apt-get install libpam0g-dev"
261 echo -n 'postgresql: '
262 psql --version || fatal "No postgresql. Try: apt-get install postgresql postgresql-client-common"
263 echo -n 'phantomjs: '
264 phantomjs --version || fatal "No phantomjs. Try: apt-get install phantomjs"
266 which Xvfb || fatal "No xvfb. Try: apt-get install xvfb"
268 dot -V || fatal "No graphviz. Try: apt-get install graphviz"
269 echo -n 'geckodriver: '
270 geckodriver --version | grep ^geckodriver || echo "No geckodriver. Try: wget -O- https://github.com/mozilla/geckodriver/releases/download/v0.23.0/geckodriver-v0.23.0-linux64.tar.gz | sudo tar -C /usr/local/bin -xzf - geckodriver"
272 if [[ "$NEED_SDK_R" = true ]]; then
275 which Rscript || fatal "No Rscript. Try: apt-get install r-base"
277 Rscript -e "library('testthat')" || fatal "No testthat. Try: apt-get install r-cran-testthat"
278 # needed for roxygen2, needed for devtools, needed for R sdk
279 pkg-config --exists libxml-2.0 || fatal "No libxml2. Try: apt-get install libxml2-dev"
280 # needed for pkgdown, builds R SDK doc pages
281 which pandoc || fatal "No pandoc. Try: apt-get install pandoc"
283 echo 'procs with /dev/fuse open:'
284 find /proc/*/fd -lname /dev/fuse 2>/dev/null | cut -d/ -f3 | xargs --no-run-if-empty ps -lywww
285 echo 'grep fuse /proc/self/mountinfo:'
286 grep fuse /proc/self/mountinfo
290 # i.e. rotate_logfile "$WORKSPACE/apps/workbench/log/" "test.log"
291 # $BUILD_NUMBER is set by Jenkins if this script is being called as part of a Jenkins run
292 if [[ -f "$1/$2" ]]; then
293 THEDATE=`date +%Y%m%d%H%M%S`
294 mv "$1/$2" "$1/$THEDATE-$BUILD_NUMBER-$2"
295 gzip "$1/$THEDATE-$BUILD_NUMBER-$2"
303 skip[apps/workbench_profile]=1
310 echo >&2 "$helpmessage"
318 only[$1]=1; skip[$1]=""; shift
330 only_install="$1"; shift
340 repeat=$((${1}+0)); shift
346 suite="${arg%%_test=*}"
348 testargs["$suite"]="$args"
351 eval export $(echo $arg | cut -d= -f1)=\"$(echo $arg | cut -d= -f2-)\"
354 echo >&2 "$0: Unrecognized option: '$arg'. Try: $0 --help"
360 # R SDK installation is very slow (~360s in a clean environment) and only
361 # required when testing it. Skip that step if it is not needed.
364 if [[ ${#only[@]} -ne 0 ]] &&
365 [[ -z "${only['sdk/R']}" && -z "${only['doc']}" ]]; then
369 if [[ ${skip["sdk/R"]} == 1 && ${skip["doc"]} == 1 ]]; then
373 if [[ $NEED_SDK_R == false ]]; then
374 echo "R SDK not needed, it will not be installed."
379 pid="$(cat "$WORKSPACE/tmp/${svc}.pid")"
380 if [[ -z "$pid" ]] || ! kill -0 "$pid"; then
381 tail $WORKSPACE/tmp/${1}*.log
382 echo "${svc} pid ${pid} not running"
385 echo "${svc} pid ${pid} ok"
390 base=$("${VENV3DIR}/bin/python3" -c "import yaml; print(list(yaml.safe_load(open('$ARVADOS_CONFIG','r'))['Clusters']['zzzzz']['Services']['$1']['InternalURLs'].keys())[0])")
391 url="$base/_health/ping"
392 if ! curl -Ss -H "Authorization: Bearer e687950a23c3a9bceec28c6223a06c79" "${url}" | tee -a /dev/stderr | grep '"OK"'; then
398 checkdiscoverydoc() {
399 dd="https://${1}/discovery/v1/apis/arvados/v1/rest"
400 if ! (set -o pipefail; curl -fsk "$dd" | grep -q ^{ ); then
401 echo >&2 "ERROR: could not retrieve discovery doc from RailsAPI at $dd"
402 tail -v $WORKSPACE/tmp/railsapi.log
409 if [[ -n "$ARVADOS_TEST_API_HOST" ]]; then
412 . "$VENV3DIR/bin/activate"
413 echo 'Starting API, controller, keepproxy, keep-web, arv-git-httpd, ws, and nginx ssl proxy...'
414 if [[ ! -d "$WORKSPACE/services/api/log" ]]; then
415 mkdir -p "$WORKSPACE/services/api/log"
417 # Remove empty api.pid file if it exists
418 if [[ -f "$WORKSPACE/tmp/api.pid" && ! -s "$WORKSPACE/tmp/api.pid" ]]; then
419 rm -f "$WORKSPACE/tmp/api.pid"
421 all_services_stopped=
425 && eval $(python3 sdk/python/tests/run_test_server.py start --auth admin) \
426 && export ARVADOS_TEST_API_HOST="$ARVADOS_API_HOST" \
427 && export ARVADOS_TEST_API_INSTALLED="$$" \
428 && checkpidfile api \
429 && checkdiscoverydoc $ARVADOS_API_HOST \
430 && eval $(python3 sdk/python/tests/run_test_server.py start_nginx) \
431 && checkpidfile nginx \
432 && python3 sdk/python/tests/run_test_server.py start_controller \
433 && checkpidfile controller \
434 && checkhealth Controller \
435 && checkdiscoverydoc $ARVADOS_API_HOST \
436 && python3 sdk/python/tests/run_test_server.py start_keep_proxy \
437 && checkpidfile keepproxy \
438 && python3 sdk/python/tests/run_test_server.py start_keep-web \
439 && checkpidfile keep-web \
440 && checkhealth WebDAV \
441 && python3 sdk/python/tests/run_test_server.py start_arv-git-httpd \
442 && checkpidfile arv-git-httpd \
443 && checkhealth GitHTTP \
444 && python3 sdk/python/tests/run_test_server.py start_ws \
446 && export ARVADOS_TEST_PROXY_SERVICES=1 \
447 && (env | egrep ^ARVADOS) \
450 if [[ $fail != 0 ]]; then
451 unset ARVADOS_TEST_API_HOST
457 if [[ -n "$all_services_stopped" ]]; then
460 unset ARVADOS_TEST_API_HOST ARVADOS_TEST_PROXY_SERVICES
461 . "$VENV3DIR/bin/activate" || return
463 && python3 sdk/python/tests/run_test_server.py stop_nginx \
464 && python3 sdk/python/tests/run_test_server.py stop_arv-git-httpd \
465 && python3 sdk/python/tests/run_test_server.py stop_ws \
466 && python3 sdk/python/tests/run_test_server.py stop_keep-web \
467 && python3 sdk/python/tests/run_test_server.py stop_keep_proxy \
468 && python3 sdk/python/tests/run_test_server.py stop_controller \
469 && python3 sdk/python/tests/run_test_server.py stop \
470 && all_services_stopped=1
476 failures+=("($(basename $0) interrupted)")
481 setup_ruby_environment() {
482 if [[ -s "$HOME/.rvm/scripts/rvm" ]] ; then
483 source "$HOME/.rvm/scripts/rvm"
485 elif [[ -s "/usr/local/rvm/scripts/rvm" ]] ; then
486 source "/usr/local/rvm/scripts/rvm"
492 if [[ "$using_rvm" == true ]]; then
493 # If rvm is in use, we can't just put separate "dependencies"
494 # and "gems-under-test" paths to GEM_PATH: passenger resets
495 # the environment to the "current gemset", which would lose
496 # our GEM_PATH and prevent our test suites from running ruby
497 # programs (for example, the Workbench test suite could not
498 # boot an API server or run arv). Instead, we have to make an
499 # rvm gemset and use it for everything.
501 [[ `type rvm | head -n1` == "rvm is a function" ]] \
504 # Put rvm's favorite path back in first place (overriding
505 # virtualenv, which just put itself there). Ignore rvm's
506 # complaint about not being in first place already.
507 rvm use @default 2>/dev/null
509 # Create (if needed) and switch to an @arvados-tests-* gemset,
510 # salting the gemset name so it doesn't interfere with
511 # concurrent builds in other workspaces. Leave the choice of
512 # ruby to the caller.
513 gemset="arvados-tests-$(echo -n "${WORKSPACE}" | md5sum | head -c16)"
514 rvm use "@${gemset}" --create \
515 || fatal 'rvm gemset setup'
518 (bundle version | grep -q 2.2.19) || gem install --no-document bundler -v 2.2.19
519 bundle="$(which bundle)"
521 "$bundle" version | grep 2.2.19 || fatal 'install bundler'
523 # When our "bundle install"s need to install new gems to
524 # satisfy dependencies, we want them to go where "gem install
525 # --user-install" would put them. (However, if the caller has
526 # already set GEM_HOME, we assume that's where dependencies
527 # should be installed, and we should leave it alone.)
529 if [ -z "$GEM_HOME" ]; then
530 user_gempath="$(gem env gempath)"
531 export GEM_HOME="${user_gempath%%:*}"
533 PATH="$(gem env gemdir)/bin:$PATH"
535 # When we build and install our own gems, we install them in our
536 # $GEMHOME tmpdir, and we want them to be at the front of GEM_PATH and
537 # PATH so integration tests prefer them over other versions that
538 # happen to be installed in $user_gempath, system dirs, etc.
540 tmpdir_gem_home="$(env - PATH="$PATH" HOME="$GEMHOME" gem env gempath | cut -f1 -d:)"
541 PATH="$tmpdir_gem_home/bin:$PATH"
542 export GEM_PATH="$tmpdir_gem_home:$(gem env gempath)"
544 echo "Will install dependencies to $(gem env gemdir)"
545 echo "Will install bundler and arvados gems to $tmpdir_gem_home"
546 echo "Gem search path is GEM_PATH=$GEM_PATH"
551 for v in ${versions[@]}; do
552 if ! gem list --installed --version "${v}" bundler >/dev/null; then
553 gem install --no-document --user $(for v in ${versions[@]}; do echo bundler:${v}; done)
557 "$bundle" version | tee /dev/stderr | grep -q 'version 2'
558 ) || fatal 'install bundler'
563 if [[ "$using_rvm" == true ]]; then
566 GEM_HOME="$tmpdir_gem_home" GEM_PATH="$tmpdir_gem_home" "$@"
570 gem_uninstall_if_exists() {
571 if gem list "$1\$" | egrep '^\w'; then
572 gem uninstall --force --all --executables "$1"
577 local venvdest="$1"; shift
578 if ! [[ -e "$venvdest/bin/activate" ]] || ! [[ -e "$venvdest/bin/pip3" ]]; then
579 python3 -m venv "$@" "$venvdest" || fatal "virtualenv $venvdest failed"
580 elif [[ -n "$short" ]]; then
583 "$venvdest/bin/pip3" install --no-cache-dir 'setuptools>=18.5' 'pip>=7'
587 # If dependencies like ruby, go, etc. are installed in
588 # /var/lib/arvados -- presumably by "arvados-server install" --
589 # then we want to use those versions, instead of whatever happens
590 # to be installed in /usr.
591 PATH="/var/lib/arvados/bin:${PATH}"
594 echo "WORKSPACE=$WORKSPACE"
596 # Clean up .pyc files that may exist in the workspace
598 find -name '*.pyc' -delete
600 if [[ -z "$temp" ]]; then
604 # Set up temporary install dirs (unless existing dirs were supplied)
605 for tmpdir in VENV3DIR GOPATH GEMHOME PERLINSTALLBASE R_LIBS
607 if [[ -z "${!tmpdir}" ]]; then
608 eval "$tmpdir"="$temp/$tmpdir"
610 if ! [[ -d "${!tmpdir}" ]]; then
611 mkdir "${!tmpdir}" || fatal "can't create ${!tmpdir} (does $temp exist?)"
615 rm -vf "${WORKSPACE}/tmp/*.log"
617 export PERLINSTALLBASE
618 export PERL5LIB="$PERLINSTALLBASE/lib/perl5${PERL5LIB:+:$PERL5LIB}"
623 # Make sure our compiled binaries under test override anything
624 # else that might be in the environment.
625 export PATH=$GOPATH/bin:$PATH
627 # Jenkins config requires that glob tmp/*.log match something. Ensure
628 # that happens even if we don't end up running services that set up
630 mkdir -p "${WORKSPACE}/tmp/" || fatal "could not mkdir ${WORKSPACE}/tmp"
631 touch "${WORKSPACE}/tmp/controller.log" || fatal "could not touch ${WORKSPACE}/tmp/controller.log"
633 unset http_proxy https_proxy no_proxy
635 # Note: this must be the last time we change PATH, otherwise rvm will
637 setup_ruby_environment
643 go mod download || fatal "Go deps failed"
644 which goimports >/dev/null || go install golang.org/x/tools/cmd/goimports@latest || fatal "Go setup failed"
646 setup_virtualenv "$VENV3DIR"
647 . "$VENV3DIR/bin/activate"
649 # Needed for run_test_server.py which is used by certain (non-Python) tests.
650 # pdoc3 needed to generate the Python SDK documentation.
653 "${VENV3DIR}/bin/pip3" install wheel
654 "${VENV3DIR}/bin/pip3" install PyYAML
655 "${VENV3DIR}/bin/pip3" install httplib2
656 "${VENV3DIR}/bin/pip3" install future
657 "${VENV3DIR}/bin/pip3" install google-api-python-client
658 "${VENV3DIR}/bin/pip3" install ciso8601
659 "${VENV3DIR}/bin/pip3" install pycurl
660 "${VENV3DIR}/bin/pip3" install ws4py
661 "${VENV3DIR}/bin/pip3" install pdoc3
662 cd "$WORKSPACE/sdk/python"
663 python3 setup.py install
664 ) || fatal "installing PyYAML and sdk/python failed"
672 if [[ "$remain" -gt 1 ]]; then
673 remain=$((${remain}-1))
674 title "(repeating ${remain} more times)"
678 elif [[ "$retry" == 1 ]]; then
679 read -p 'Try again? [Y/n] ' x
680 if [[ "$x" != "y" ]] && [[ "$x" != "" ]]
692 apps/workbench_units | apps/workbench_functionals | apps/workbench_integration)
699 if [[ -n "${skip[$suite]}" || \
700 -n "${skip[$1]}" || \
701 (${#only[@]} -ne 0 && ${only[$suite]} -eq 0 && ${only[$1]} -eq 0) ]]; then
707 check_arvados_config "$1"
709 gofmt | doc | lib/cli | lib/cloud/azure | lib/cloud/ec2 | lib/cloud/cloudtest | lib/cmd | lib/dispatchcloud/sshexecutor | lib/dispatchcloud/worker)
710 check_arvados_config "$1"
711 # don't care whether services are running
714 check_arvados_config "$1"
715 if ! start_services; then
716 checkexit 1 "$1 tests"
717 title "test $1 -- failed to start services"
722 retry do_test_once ${@}
726 version=${ARVADOS_VERSION:-$(git log -n1 --format=%H)-dev}
727 echo "-X git.arvados.org/arvados.git/lib/cmd.version=${version} -X main.version=${version}"
737 if which deactivate >/dev/null; then deactivate; fi
738 if ! . "$VENV3DIR/bin/activate"
741 elif [[ "$2" == "go" ]]
743 covername="coverage-$(echo "$1" | sed -e 's/\//_/g')"
744 coverflags=("-covermode=count" "-coverprofile=$WORKSPACE/tmp/.$covername.tmp")
745 # We do "go install" here to catch compilation errors
746 # before trying "go test". Otherwise, coverage-reporting
747 # mode makes Go show the wrong line numbers when reporting
748 # compilation errors.
749 go install -ldflags "$(go_ldflags)" "$WORKSPACE/$1" && \
750 cd "$WORKSPACE/$1" && \
751 if [[ -n "${testargs[$1]}" ]]
753 # "go test -check.vv giturl" doesn't work, but this
755 go test ${short:+-short} ${testargs[$1]}
757 # The above form gets verbose even when testargs is
758 # empty, so use this form in such cases:
759 go test ${short:+-short} ${coverflags[@]} "git.arvados.org/arvados.git/$1"
762 if [[ -f "$WORKSPACE/tmp/.$covername.tmp" ]]
764 go tool cover -html="$WORKSPACE/tmp/.$covername.tmp" -o "$WORKSPACE/tmp/$covername.html"
765 rm "$WORKSPACE/tmp/.$covername.tmp"
767 [[ $result = 0 ]] && gofmt -e -d *.go
768 elif [[ "$2" == "pip" ]]
771 cd "$WORKSPACE/$1" && while :
773 tries=$((${tries}+1))
774 # $3 can name a path directory for us to use, including trailing
775 # slash; e.g., the bin/ subdirectory of a virtualenv.
776 if [[ -e "${3}activate" ]]; then
779 python setup.py ${short:+--short-tests-only} test ${testargs[$1]}
781 if [[ ${tries} < 3 && ${result} == 137 ]]
783 printf '\n*****\n%s tests killed -- retrying\n*****\n\n' "$1"
789 elif [[ "$2" != "" ]]
796 checkexit $result "$1 tests"
797 title "test $1 -- `timer`"
801 check_arvados_config() {
802 if [[ "$1" = "env" ]] ; then
805 if [[ -z "$ARVADOS_CONFIG" ]] ; then
806 # Create config file. The run_test_server script requires PyYAML,
807 # so virtualenv needs to be active. Downstream steps like
808 # workbench install which require a valid config.yml.
809 if [[ ! -s "$VENV3DIR/bin/activate" ]] ; then
812 . "$VENV3DIR/bin/activate"
814 eval $(python3 sdk/python/tests/run_test_server.py setup_config)
820 if [[ -n "${skip[install]}" || ( -n "${only_install}" && "${only_install}" != "${1}" && "${only_install}" != "${2}" ) ]]; then
823 check_arvados_config "$1"
824 retry do_install_once ${@}
832 if which deactivate >/dev/null; then deactivate; fi
833 if [[ "$1" != "env" ]] && ! . "$VENV3DIR/bin/activate"; then
835 elif [[ "$2" == "go" ]]
837 go install -ldflags "$(go_ldflags)" "$WORKSPACE/$1"
838 elif [[ "$2" == "pip" ]]
840 # $3 can name a path directory for us to use, including trailing
841 # slash; e.g., the bin/ subdirectory of a virtualenv.
843 # Need to change to a different directory after creating
844 # the source dist package to avoid a pip bug.
845 # see https://arvados.org/issues/5766 for details.
847 # Also need to install twice, because if it believes the package is
848 # already installed, pip it won't install it. So the first "pip
849 # install" ensures that the dependencies are met, the second "pip
850 # install" ensures that we've actually installed the local package
853 && "${3}python3" setup.py sdist rotate --keep=1 --match .tar.gz \
855 && "${3}pip3" install --no-cache-dir "$WORKSPACE/$1/dist"/*.tar.gz \
856 && "${3}pip3" install --no-cache-dir --no-deps --ignore-installed "$WORKSPACE/$1/dist"/*.tar.gz
857 elif [[ "$2" != "" ]]
864 checkexit $result "$1 install"
865 title "install $1 -- `timer`"
869 bundle_install_trylocal() {
872 echo "(Running bundle install --local. 'could not find package' messages are OK.)"
873 if ! "$bundle" install --local --no-deployment; then
874 echo "(Running bundle install again, without --local.)"
875 "$bundle" install --no-deployment
882 cd "$WORKSPACE/doc" \
883 && bundle_install_trylocal \
890 with_test_gemset gem_uninstall_if_exists "$gemname" \
891 && cd "$WORKSPACE/$srcpath" \
892 && bundle_install_trylocal \
893 && gem build "$gemname.gemspec" \
894 && with_test_gemset gem install --no-document $(ls -t "$gemname"-*.gem|head -n1)
898 install_gem arvados sdk/ruby
902 if [[ "$NEED_SDK_R" = true ]]; then
903 cd "$WORKSPACE/sdk/R" \
904 && Rscript --vanilla install_deps.R
909 cd "$WORKSPACE/sdk/perl" \
910 && perl Makefile.PL INSTALL_BASE="$PERLINSTALLBASE" \
911 && make install INSTALLDIRS=perl
915 install_gem arvados-cli sdk/cli
918 install_services/login-sync() {
919 install_gem arvados-login-sync services/login-sync
922 install_services/api() {
924 check_arvados_config "services/api"
925 cd "$WORKSPACE/services/api" \
926 && RAILS_ENV=test bundle_install_trylocal \
929 rm -f config/environments/test.rb
930 cp config/environments/test.rb.example config/environments/test.rb
932 # Clear out any lingering postgresql connections to the test
933 # database, so that we can drop it. This assumes the current user
934 # is a postgresql superuser.
935 cd "$WORKSPACE/services/api" \
936 && test_database=$("${VENV3DIR}/bin/python3" -c "import yaml; print(yaml.safe_load(open('$ARVADOS_CONFIG','r'))['Clusters']['zzzzz']['PostgreSQL']['Connection']['dbname'])") \
937 && psql "$test_database" -c "SELECT pg_terminate_backend (pg_stat_activity.pid::int) FROM pg_stat_activity WHERE pg_stat_activity.datname = '$test_database';" 2>/dev/null
939 mkdir -p "$WORKSPACE/services/api/tmp/pids"
941 cert="$WORKSPACE/services/api/tmp/self-signed"
942 if [[ ! -e "$cert.pem" || "$(date -r "$cert.pem" +%s)" -lt 1512659226 ]]; then
944 dir="$WORKSPACE/services/api/tmp"
946 openssl req -newkey rsa:2048 -nodes -subj '/C=US/ST=State/L=City/CN=localhost' -out "$cert.csr" -keyout "$cert.key" </dev/null
947 openssl x509 -req -in "$cert.csr" -signkey "$cert.key" -out "$cert.pem" -days 3650 -extfile <(printf 'subjectAltName=DNS:localhost,DNS:::1,DNS:0.0.0.0,DNS:127.0.0.1,IP:::1,IP:0.0.0.0,IP:127.0.0.1')
951 cd "$WORKSPACE/services/api" \
953 && mkdir -p tmp/git \
955 && tar xf ../../test/test.git.tar \
956 && mkdir -p internal.git \
957 && git --git-dir internal.git init \
962 cd "$WORKSPACE/services/api"
963 export RAILS_ENV=test
964 if "$bundle" exec rails db:environment:set ; then
965 "$bundle" exec rake db:drop
967 "$bundle" exec rake db:setup
968 "$bundle" exec rake db:fixtures:load
972 declare -a pythonstuff
976 services/dockercleaner:py3
978 tools/crunchstat-summary:py3
982 gostuff=($(cd "$WORKSPACE" && git grep -lw func | grep \\.go | sed -e 's/\/[^\/]*$//' | sort -u))
984 install_apps/workbench() {
985 cd "$WORKSPACE/apps/workbench" \
986 && mkdir -p tmp/cache \
987 && RAILS_ENV=test bundle_install_trylocal \
988 && RAILS_ENV=test RAILS_GROUPS=assets "$bundle" exec rake npm:install
995 ARVADOS_API_HOST=pirca.arvadosapi.com
996 # Make sure python-epydoc is installed or the next line won't
998 PYTHONPATH=$WORKSPACE/sdk/python/ "$bundle" exec rake linkchecker baseurl=file://$WORKSPACE/doc/.site/ arvados_workbench_host=https://workbench.$ARVADOS_API_HOST arvados_api_host=$ARVADOS_API_HOST
1003 cd "$WORKSPACE" || return 1
1004 dirs=$(ls -d */ | egrep -v 'vendor|tmp')
1005 [[ -z "$(gofmt -e -d $dirs | tee -a /dev/stderr)" ]]
1008 test_services/api() {
1009 rm -f "$WORKSPACE/services/api/git-commit.version"
1010 cd "$WORKSPACE/services/api" \
1011 && eval env RAILS_ENV=test ${short:+RAILS_TEST_SHORT=1} "$bundle" exec rake test TESTOPTS=\'-v -d\' ${testargs[services/api]}
1015 cd "$WORKSPACE/sdk/ruby" \
1016 && "$bundle" exec rake test TESTOPTS=-v ${testargs[sdk/ruby]}
1020 if [[ "$NEED_SDK_R" = true ]]; then
1021 cd "$WORKSPACE/sdk/R" \
1022 && Rscript --vanilla run_test.R
1027 cd "$WORKSPACE/sdk/cli" \
1028 && mkdir -p /tmp/keep \
1029 && KEEP_LOCAL_STORE=/tmp/keep "$bundle" exec rake test TESTOPTS=-v ${testargs[sdk/cli]}
1032 test_sdk/java-v2() {
1033 cd "$WORKSPACE/sdk/java-v2" && gradle test ${testargs[sdk/java-v2]}
1036 test_services/login-sync() {
1037 cd "$WORKSPACE/services/login-sync" \
1038 && "$bundle" exec rake test TESTOPTS=-v ${testargs[services/login-sync]}
1041 test_apps/workbench_units() {
1042 local TASK="test:units"
1043 cd "$WORKSPACE/apps/workbench" \
1044 && eval env RAILS_ENV=test ${short:+RAILS_TEST_SHORT=1} "$bundle" exec rake ${TASK} TESTOPTS=\'-v -d\' ${testargs[apps/workbench]} ${testargs[apps/workbench_units]}
1047 test_apps/workbench_functionals() {
1048 local TASK="test:functionals"
1049 cd "$WORKSPACE/apps/workbench" \
1050 && eval env RAILS_ENV=test ${short:+RAILS_TEST_SHORT=1} "$bundle" exec rake ${TASK} TESTOPTS=\'-v -d\' ${testargs[apps/workbench]} ${testargs[apps/workbench_functionals]}
1053 test_apps/workbench_integration() {
1054 local TASK="test:integration"
1055 cd "$WORKSPACE/apps/workbench" \
1056 && eval env RAILS_ENV=test ${short:+RAILS_TEST_SHORT=1} "$bundle" exec rake ${TASK} TESTOPTS=\'-v -d\' ${testargs[apps/workbench]} ${testargs[apps/workbench_integration]}
1059 test_apps/workbench_benchmark() {
1060 local TASK="test:benchmark"
1061 cd "$WORKSPACE/apps/workbench" \
1062 && eval env RAILS_ENV=test ${short:+RAILS_TEST_SHORT=1} "$bundle" exec rake ${TASK} ${testargs[apps/workbench_benchmark]}
1065 test_apps/workbench_profile() {
1066 local TASK="test:profile"
1067 cd "$WORKSPACE/apps/workbench" \
1068 && eval env RAILS_ENV=test ${short:+RAILS_TEST_SHORT=1} "$bundle" exec rake ${TASK} ${testargs[apps/workbench_profile]}
1072 # Install parts needed by test suites
1074 do_install cmd/arvados-server go
1077 do_install sdk/python pip "${VENV3DIR}/bin/"
1079 do_install services/api
1080 do_install services/arv-git-httpd go
1081 do_install services/keepproxy go
1082 do_install services/keep-web go
1092 do_install services/login-sync
1093 for p in "${pythonstuff[@]}"
1096 if [[ -z ${skip[python3]} ]]; then
1097 do_install ${dir} pip "$VENV3DIR/bin/"
1100 for g in "${gostuff[@]}"
1104 do_install services/api
1105 do_install apps/workbench
1110 do_test services/api
1112 # Shortcut for when we're only running apiserver tests. This saves a bit of time,
1113 # because we don't need to start up the api server for subsequent tests.
1114 if [ ! -z "$only" ] && [ "$only" == "services/api" ]; then
1115 rotate_logfile "$WORKSPACE/services/api/log/" "test.log"
1124 do_test services/login-sync
1126 for p in "${pythonstuff[@]}"
1129 if [[ -z ${skip[python3]} ]]; then
1130 do_test ${dir} pip "$VENV3DIR/bin/"
1134 for g in "${gostuff[@]}"
1138 do_test apps/workbench_units
1139 do_test apps/workbench_functionals
1140 do_test apps/workbench_integration
1141 do_test apps/workbench_benchmark
1142 do_test apps/workbench_profile
1147 for g in "${gostuff[@]}"
1153 help_interactive() {
1154 echo "== Interactive commands:"
1155 echo "TARGET (short for 'test DIR')"
1157 echo "10 test TARGET (run test 10 times)"
1158 echo "test TARGET:py3 (test with python3)"
1159 echo "test TARGET -check.vv (pass arguments to test)"
1160 echo "install TARGET"
1161 echo "install env (go/python libs)"
1162 echo "install deps (go/python libs + arvados components needed for integration tests)"
1163 echo "reset (...services used by integration tests)"
1165 echo "== Test targets:"
1166 echo "${!testfuncargs[@]}" | tr ' ' '\n' | sort | column
1171 declare -A testfuncargs=()
1172 for g in "${gostuff[@]}"; do
1173 testfuncargs[$g]="$g go"
1175 for p in "${pythonstuff[@]}"; do
1177 testfuncargs[$dir:py3]="$dir pip $VENV3DIR/bin/"
1180 testfuncargs["sdk/cli"]="sdk/cli"
1181 testfuncargs["sdk/R"]="sdk/R"
1182 testfuncargs["sdk/java-v2"]="sdk/java-v2"
1183 testfuncargs["apps/workbench_units"]="apps/workbench_units"
1184 testfuncargs["apps/workbench_functionals"]="apps/workbench_functionals"
1185 testfuncargs["apps/workbench_integration"]="apps/workbench_integration"
1186 testfuncargs["apps/workbench_benchmark"]="apps/workbench_benchmark"
1187 testfuncargs["apps/workbench_profile"]="apps/workbench_profile"
1189 if [[ -z ${interactive} ]]; then
1196 if [[ -e "$VENV3DIR/bin/activate" ]]; then stop_services; fi
1198 if [[ "$TERM" = dumb ]]; then
1199 # assume emacs, or something, is offering a history buffer
1200 # and pre-populating the command will only cause trouble
1202 elif [[ ! -e "$VENV3DIR/bin/activate" ]]; then
1203 nextcmd="install deps"
1210 nextcmd="install deps"
1212 HISTFILE="$WORKSPACE/tmp/.history"
1214 while read -p 'What next? ' -e -i "$nextcmd" nextcmd; do
1215 history -s "$nextcmd"
1218 if [[ "${nextcmd}" =~ ^[0-9] ]]; then
1219 read count nextcmd <<<"${nextcmd}"
1221 read verb target opts <<<"${nextcmd}"
1222 target="${target%/}"
1223 target="${target/\/:/:}"
1240 argstarget=${target%:py3}
1241 testargs["$argstarget"]="${opts}"
1242 tt="${testfuncargs[${target}]}"
1244 while [ $count -gt 0 ]; do
1255 if [[ ${#successes[@]} -gt 0 || ${#failures[@]} -gt 0 ]]; then