sdk/python/tests/fed-migrate/run-test.cwl

   1 #!/usr/bin/env cwl-runner
   2 class: Workflow
   3 cwlVersion: v1.0
   4 id: '#main'
   5 inputs:
   6   - id: arvados_api_hosts
   7     type:
   8       items: string
   9       type: array
  10   - id: superuser_tokens
  11     type:
  12       items: string
  13       type: array
  14   - default: arv-federation-migrate
  15     id: fed_migrate
  16     type: string
  17 outputs:
  18   - id: out
  19     outputSource: main_2/out
  20     type: File
  21 requirements:
  22   InlineJavascriptRequirement: {}
  23   MultipleInputFeatureRequirement: {}
  24   ScatterFeatureRequirement: {}
  25   StepInputExpressionRequirement: {}
  26   SubworkflowFeatureRequirement: {}
  27 steps:
  28   - id: main_1
  29     in:
  30       arvados_api_hosts:
  31         source: arvados_api_hosts
  32       create_users:
  33         default:
  34           class: File
  35           location: create_users.py
  36       superuser_tokens:
  37         source: superuser_tokens
  38     out:
  39       - ar
  40     run:
  41       arguments:
  42         - python
  43         - $(inputs.create_users)
  44         - _script
  45       class: CommandLineTool
  46       id: main_1_embed
  47       inputs:
  48         - id: arvados_api_hosts
  49           type:
  50             items: string
  51             type: array
  52         - id: superuser_tokens
  53           type:
  54             items: string
  55             type: array
  56         - id: create_users
  57           type: File
  58       outputs:
  59         - id: ar
  60           outputBinding:
  61             outputEval: $(inputs.arvados_api_hosts)
  62           type:
  63             items: string
  64             type: array
  65       requirements:
  66         InitialWorkDirRequirement:
  67           listing:
  68             - entry: |
  69                 {
  70                   "arvados_api_hosts": $(inputs.arvados_api_hosts),
  71                   "superuser_tokens": $(inputs.superuser_tokens)
  72                 }
  73               entryname: _script
  74         InlineJavascriptRequirement: {}
  75   - id: main_2
  76     in:
  77       ar:
  78         source: main_1/ar
  79       arvados_api_hosts:
  80         source: arvados_api_hosts
  81       fed_migrate:
  82         source: fed_migrate
  83       host:
  84         valueFrom: '$(inputs.arvados_api_hosts[0])'
  85       superuser_tokens:
  86         source: superuser_tokens
  87       token:
  88         valueFrom: '$(inputs.superuser_tokens[0])'
  89     out:
  90       - out
  91     run:
  92       arguments:
  93         - $(inputs.fed_migrate)
  94         - '--report'
  95         - out
  96       class: CommandLineTool
  97       id: main_2_embed
  98       inputs:
  99         - id: arvados_api_hosts
 100           type:
 101             items: string
 102             type: array
 103         - id: superuser_tokens
 104           type:
 105             items: string
 106             type: array
 107         - id: ar
 108           type:
 109             items: string
 110             type: array
 111         - id: fed_migrate
 112           type: string
 113         - id: host
 114           type: Any
 115         - id: token
 116           type: Any
 117       outputs:
 118         - id: out
 119           outputBinding:
 120             glob: out
 121           type: File
 122       requirements:
 123         - class: EnvVarRequirement
 124           envDef:
 125             ARVADOS_API_HOST: $(inputs.host)
 126             ARVADOS_API_TOKEN: $(inputs.token)
 127