apps/workbench/app/views/work_units/_component_detail.html.erb

   1 <%
   2   collections = [current_obj.outputs, current_obj.docker_image].flatten.compact.uniq
   3   collections_pdhs = collections.select {|x| !CollectionsHelper.match(x).nil?}.uniq.compact
   4   collections_uuids = collections - collections_pdhs
   5   preload_collections_for_objects collections_uuids if collections_uuids.any?
   6   preload_links_for_objects collections_uuids if collections_uuids.any?
   7
   8   preload_objects_for_dataclass(Repository, [current_obj.repository], :name) if current_obj.repository
   9
  10   # if container_X, preload mounted collections
  11   if @object.is_a? Container or @object.is_a? ContainerRequest
  12     # get any collections in mounts
  13     mounts = current_obj.send(:mounts) if current_obj.respond_to?(:mounts)
  14     input_obj = mounts.andand[:"/var/lib/cwl/cwl.input.json"].andand[:content]
  15     if input_obj
  16       input_obj.to_s.scan(/([0-9a-f]{32}\+\d+)/).each {|cs| collections_pdhs += cs}
  17     end
  18
  19     command = current_obj.send(:command) if current_obj.respond_to?(:command)
  20     if command
  21       command.to_s.scan(/([0-9a-f]{32}\+\d+)/).each {|cs| collections_pdhs += cs}
  22     end
  23   end
  24
  25   collections_pdhs.compact.uniq
  26   preload_for_pdhs collections_pdhs if collections_pdhs.any?
  27   preload_links_for_objects collections_pdhs if collections_pdhs.any?
  28 %>
  29
  30       <div class="container">
  31         <div class="row">
  32           <div class="col-md-6" style="overflow-x: auto">
  33             <% if current_obj.uuid.nil? %>
  34               No <%= current_obj.title %> has been submitted yet.
  35             <% else %>
  36             <table class="table table-condensed">
  37               <% keys = [:uuid, :modified_by_user_uuid, :created_at, :started_at, :finished_at, :container_uuid] %>
  38               <% keys << :log_collection if @object.uuid != current_obj.uuid %>
  39               <% keys << :outputs %>
  40               <% keys.each do |k| %>
  41                 <%
  42                   val = current_obj.send(k) if current_obj.respond_to?(k)
  43                   if k == :outputs
  44                     has_val = val.andand.any?
  45                   elsif k == :log_collection and current_obj.state_label == "Running"
  46                     has_val = true
  47                   else
  48                     has_val = val
  49                   end
  50                 %>
  51                 <% if has_val %>
  52                 <tr>
  53                   <td style="padding-right: 1em">
  54                     <%= k.to_s %>:
  55                   </td>
  56                   <td>
  57                     <% if k == :uuid %>
  58                       <%= link_to_arvados_object_if_readable(val, val, link_text: val) %>
  59                     <% elsif k.to_s.end_with? 'uuid' %>
  60                       <%= link_to_arvados_object_if_readable(val, val, friendly_name: true) %>
  61                     <% elsif k.to_s.end_with? '_at' %>
  62                       <%= render_localized_date(val) %>
  63                     <% elsif k == :outputs and val.any? %>
  64                       <% if val.size == 1 %>
  65                         <%= link_to_arvados_object_if_readable(val[0], 'Output data not available', friendly_name: true) %>
  66                       <% else %>
  67                         <%= render partial: 'work_units/show_outputs', locals: {id: current_obj.uuid, outputs: val, align:""} %>
  68                       <% end %>
  69                     <% elsif k == :log_collection %>
  70                       <%= render partial: 'work_units/show_log_link', locals: {wu: current_obj} %>
  71                     <% else %>
  72                       <%= val %>
  73                     <% end %>
  74                   </td>
  75                 </tr>
  76                 <% end %>
  77               <% end %>
  78             </table>
  79             <% end %>
  80           </div>
  81           <div class="col-md-6">
  82             <table class="table table-condensed">
  83               <% # link to repo tree/file only if the repo is readable and the commit is a sha1
  84                  repo = (/^[0-9a-f]{40}$/ =~ current_obj.script_version and
  85                          current_obj.repository and
  86                          object_for_dataclass(Repository, current_obj.repository, :name))
  87                  repo = nil unless repo.andand.http_fetch_url
  88                  %>
  89               <% [:script, :repository, :script_version, :supplied_script_version, :nondeterministic,
  90                   :priority, :runtime_constraints, :requesting_container_uuid].each do |k| %>
  91                 <% val = current_obj.send(k) if current_obj.respond_to?(k) %>
  92                 <% if val %>
  93                 <tr valign="top">
  94                   <td style="padding-right: 1em">
  95                     <%= k.to_s %>:
  96                   </td>
  97                   <td>
  98                     <% if repo and k == :repository %>
  99                       <%= link_to val, show_repository_tree_path(id: repo.uuid, commit: current_obj.script_version, path: '/') %>
 100                     <% elsif repo and k == :script %>
 101                       <%= link_to val, show_repository_blob_path(id: repo.uuid, commit: current_obj.script_version, path: 'crunch_scripts/'+current_obj.script) %>
 102                     <% elsif repo and k == :script_version %>
 103                       <%= link_to val, show_repository_commit_path(id: repo.uuid, commit: current_obj.script_version) %>
 104                     <% elsif k == :runtime_constraints and val.any? %>
 105                       <%= render partial: 'work_units/show_table_data', locals: {id: current_obj.uuid, name: k, data_map: val} %>
 106                     <% elsif k.to_s.end_with? 'uuid' %>
 107                       <%= link_to_arvados_object_if_readable(val, val, friendly_name: true) %>
 108                     <% else %>
 109                       <%= val %>
 110                     <% end %>
 111                   </td>
 112                 </tr>
 113                 <% end %>
 114               <% end %>
 115
 116               <%
 117                 mounts = current_obj.send(:mounts) if current_obj.respond_to?(:mounts)
 118                 mount_wf = mounts.andand[:"/var/lib/cwl/workflow.json"]
 119                 mount_wf = mount_wf[5..-1] if mount_wf.andand.is_a?(String) and mount_wf.start_with?('keep:')
 120                 mount_wf_cls = resource_class_for_uuid(mount_wf) if mount_wf
 121               %>
 122               <tr>
 123                 <% if mount_wf_cls == Collection %>
 124                   <td style="padding-right: 1em">
 125                     workflow.json:
 126                   </td>
 127                   <td>
 128                     <%= link_to_if_arvados_object mount_wf, friendly_name: true %>
 129                   </td>
 130                 <% end %>
 131               </tr>
 132
 133               <% if current_obj.runtime_constraints.andand[:docker_image] and current_obj.docker_image %>
 134                 <tr>
 135                   <td style="padding-right: 1em">
 136                     docker_image:
 137                   </td>
 138                   <td>
 139                     <%= current_obj.runtime_constraints[:docker_image] %>
 140                   </td>
 141                 </tr>
 142                 <tr>
 143                   <td style="padding-right: 1em">
 144                     docker_image_locator:
 145                   </td>
 146                   <td>
 147                     <%= link_to_arvados_object_if_readable(current_obj.docker_image,
 148                       current_obj.docker_image, friendly_name: true) %>
 149                   </td>
 150                 </tr>
 151               <% elsif current_obj.docker_image %>
 152                 <tr>
 153                   <td style="padding-right: 1em">
 154                     docker_image_locator:
 155                   </td>
 156                   <td>
 157                     <%= link_to_arvados_object_if_readable(current_obj.docker_image,
 158                       current_obj.docker_image, friendly_name: true) %>
 159                   </td>
 160                 </tr>
 161               <% end %>
 162             </table>
 163           </div>
 164
 165           <div class="col-md-12">
 166             <table class="table table-condensed" style="table-layout:fixed;">
 167               <col width="15%" />
 168               <col width="85%" />
 169               <% [:command].each do |k| %>
 170                 <% val = current_obj.send(k) if current_obj.respond_to?(k) %>
 171                 <% if val %>
 172                 <tr>
 173                   <td valign="top">
 174                     <%= k.to_s %>:
 175                   </td>
 176                   <td style="word-wrap: break-all;">
 177                     <% if k == :command %>
 178                         <% val = JSON.pretty_generate(val) %>
 179                         <%= render partial: 'show_text_with_locators', locals: {data_height: 200, text_data: val} %>
 180                     <% else %>
 181                       <%= val %>
 182                     <% end %>
 183                   </td>
 184                 </tr>
 185                 <% end %>
 186               <% end %>
 187
 188               <%
 189                 mounts = current_obj.send(:mounts) if current_obj.respond_to?(:mounts)
 190                 input_obj = mounts.andand[:"/var/lib/cwl/cwl.input.json"].andand[:content]
 191                 mnt_inputs = JSON.pretty_generate(input_obj) if input_obj
 192               %>
 193               <% if mnt_inputs %>
 194                 <tr>
 195                   <td valign="top">
 196                     cwl.input.json:
 197                   </td>
 198                   <td style="word-wrap: break-all;">
 199                     <%= render partial: 'show_text_with_locators', locals: {data_height: 400, text_data: mnt_inputs} %>
 200                   </td>
 201                 </tr>
 202               <% end %>
 203             </table>
 204           </div>
 205
 206         </div>
 207
 208         <% if current_obj.parameters and !current_obj.parameters.empty? %>
 209         <div class="row">
 210           <div class="col-md-6">
 211             <p>script_parameters:</p>
 212             <pre><%= JSON.pretty_generate(current_obj.parameters) rescue nil %></pre>
 213           </div>
 214         </div>
 215         <% end %>
 216       </div>