1 // Copyright (C) The Arvados Authors. All rights reserved.
3 // SPDX-License-Identifier: AGPL-3.0
5 import * as React from 'react';
6 import * as ReactDOM from 'react-dom';
7 import { Provider } from "react-redux";
8 import { MainPanel } from './views/main-panel/main-panel';
10 import { Route } from 'react-router';
11 import createBrowserHistory from "history/createBrowserHistory";
12 import { History } from "history";
13 import { configureStore, RootStore } from './store/store';
14 import { ConnectedRouter } from "react-router-redux";
15 import { ApiToken } from "./views-components/api-token/api-token";
16 import { initAuth } from "./store/auth/auth-action";
17 import { createServices } from "./services/services";
18 import { MuiThemeProvider } from '@material-ui/core/styles';
19 import { CustomTheme } from './common/custom-theme';
20 import { fetchConfig } from './common/config';
21 import { addMenuActionSet, ContextMenuKind } from './views-components/context-menu/context-menu';
22 import { rootProjectActionSet } from "./views-components/context-menu/action-sets/root-project-action-set";
23 import { projectActionSet } from "./views-components/context-menu/action-sets/project-action-set";
24 import { resourceActionSet } from './views-components/context-menu/action-sets/resource-action-set';
25 import { favoriteActionSet } from "./views-components/context-menu/action-sets/favorite-action-set";
26 import { collectionFilesActionSet } from './views-components/context-menu/action-sets/collection-files-action-set';
27 import { collectionFilesItemActionSet } from './views-components/context-menu/action-sets/collection-files-item-action-set';
28 import { collectionActionSet } from './views-components/context-menu/action-sets/collection-action-set';
29 import { collectionResourceActionSet } from './views-components/context-menu/action-sets/collection-resource-action-set';
30 import { processActionSet } from './views-components/context-menu/action-sets/process-action-set';
31 import { loadWorkbench } from './store/workbench/workbench-actions';
32 import { Routes } from '~/routes/routes';
33 import { trashActionSet } from "~/views-components/context-menu/action-sets/trash-action-set";
34 import { ServiceRepository } from '~/services/services';
35 import { initWebSocket } from '~/websocket/websocket';
36 import { Config } from '~/common/config';
37 import { addRouteChangeHandlers } from './routes/route-change-handlers';
38 import { setCurrentTokenDialogApiHost } from '~/store/current-token-dialog/current-token-dialog-actions';
39 import { processResourceActionSet } from '~/views-components/context-menu/action-sets/process-resource-action-set';
40 import { progressIndicatorActions } from '~/store/progress-indicator/progress-indicator-actions';
41 import { setUuidPrefix } from '~/store/workflow-panel/workflow-panel-actions';
42 import { trashedCollectionActionSet } from '~/views-components/context-menu/action-sets/trashed-collection-action-set';
43 import { ContainerRequestState } from '~/models/container-request';
44 import { MountKind } from './models/mount-types';
46 const getBuildNumber = () => "BN-" + (process.env.REACT_APP_BUILD_NUMBER || "dev");
47 const getGitCommit = () => "GIT-" + (process.env.REACT_APP_GIT_COMMIT || "latest").substr(0, 7);
48 const getBuildInfo = () => getBuildNumber() + " / " + getGitCommit();
50 const buildInfo = getBuildInfo();
52 console.log(`Starting arvados [${buildInfo}]`);
54 addMenuActionSet(ContextMenuKind.ROOT_PROJECT, rootProjectActionSet);
55 addMenuActionSet(ContextMenuKind.PROJECT, projectActionSet);
56 addMenuActionSet(ContextMenuKind.RESOURCE, resourceActionSet);
57 addMenuActionSet(ContextMenuKind.FAVORITE, favoriteActionSet);
58 addMenuActionSet(ContextMenuKind.COLLECTION_FILES, collectionFilesActionSet);
59 addMenuActionSet(ContextMenuKind.COLLECTION_FILES_ITEM, collectionFilesItemActionSet);
60 addMenuActionSet(ContextMenuKind.COLLECTION, collectionActionSet);
61 addMenuActionSet(ContextMenuKind.COLLECTION_RESOURCE, collectionResourceActionSet);
62 addMenuActionSet(ContextMenuKind.TRASHED_COLLECTION, trashedCollectionActionSet);
63 addMenuActionSet(ContextMenuKind.PROCESS, processActionSet);
64 addMenuActionSet(ContextMenuKind.PROCESS_RESOURCE, processResourceActionSet);
65 addMenuActionSet(ContextMenuKind.TRASH, trashActionSet);
68 .then(({ config, apiHost }) => {
69 const history = createBrowserHistory();
70 const services = createServices(config, {
71 progressFn: (id, working) => {
72 store.dispatch(progressIndicatorActions.TOGGLE_WORKING({ id, working }));
74 errorFn: (id, error) => {
75 // console.error("Backend error:", error);
76 // store.dispatch(snackbarActions.OPEN_SNACKBAR({ message: "Backend error", kind: SnackbarKind.ERROR }));
79 const store = configureStore(history, services);
81 store.subscribe(initListener(history, store, services, config));
82 store.dispatch(initAuth());
83 store.dispatch(setCurrentTokenDialogApiHost(apiHost));
84 store.dispatch(setUuidPrefix(config.uuidPrefix));
86 const TokenComponent = (props: any) => <ApiToken authService={services.authService} {...props} />;
87 const MainPanelComponent = (props: any) => <MainPanel buildInfo={buildInfo} {...props} />;
90 <MuiThemeProvider theme={CustomTheme}>
91 <Provider store={store}>
92 <ConnectedRouter history={history}>
94 <Route path={Routes.TOKEN} component={TokenComponent} />
95 <Route path={Routes.ROOT} component={MainPanelComponent} />
103 document.getElementById('root') as HTMLElement
107 const initListener = (history: History, store: RootStore, services: ServiceRepository, config: Config) => {
108 let initialized = false;
110 const { router, auth } = store.getState();
111 if (router.location && auth.user && !initialized) {
113 initWebSocket(config, services.authService, store);
114 await store.dispatch(loadWorkbench());
115 addRouteChangeHandlers(history, store);
116 // createEnumCollectorWorkflow(services);
121 const createPrimitivesCollectorWorkflow = ({workflowService}:ServiceRepository) => {
122 workflowService.create({
123 name: 'Primitive values collector',
124 description: 'Workflow for collecting primitive values',
125 definition: "cwlVersion: v1.0\n$graph:\n- class: CommandLineTool\n requirements:\n - listing:\n - entryname: input_collector.log\n entry: |\n \"flag\":\n $(inputs.example_flag)\n \"string\":\n $(inputs.example_string)\n \"int\":\n $(inputs.example_int)\n \"long\":\n $(inputs.example_long)\n \"float\":\n $(inputs.example_float)\n \"double\":\n $(inputs.example_double)\n class: InitialWorkDirRequirement\n inputs:\n - type: double\n id: '#input_collector.cwl/example_double'\n - type: boolean\n id: '#input_collector.cwl/example_flag'\n - type: float\n id: '#input_collector.cwl/example_float'\n - type: int\n id: '#input_collector.cwl/example_int'\n - type: long\n id: '#input_collector.cwl/example_long'\n - type: string\n id: '#input_collector.cwl/example_string'\n outputs:\n - type: File\n outputBinding:\n glob: '*'\n id: '#input_collector.cwl/output'\n baseCommand: [echo]\n id: '#input_collector.cwl'\n- class: Workflow\n doc: Workflw for collecting primitive values\n inputs:\n - type: double\n label: Double value\n doc: This should allow for entering a decimal number (64-bit).\n id: '#main/example_double'\n default: 0.3333333333333333\n - type: boolean\n label: Boolean Flag\n doc: This should render as in checkbox.\n id: '#main/example_flag'\n default: true\n - type: float\n label: Float value\n doc: This should allow for entering a decimal number (32-bit).\n id: '#main/example_float'\n default: 0.15625\n - type: int\n label: Integer Number\n doc: This should allow for entering a number (32-bit signed).\n id: '#main/example_int'\n default: 2147483647\n - type: long\n label: Long Number\n doc: This should allow for entering a number (64-bit signed).\n id: '#main/example_long'\n default: 9223372036854775807\n - type: string\n label: Freetext\n doc: This should allow for entering an arbitrary char sequence.\n id: '#main/example_string'\n default: This is a string\n outputs:\n - type: File\n outputSource: '#main/input_collector/output'\n id: '#main/log_file'\n steps:\n - run: '#input_collector.cwl'\n in:\n - source: '#main/example_double'\n id: '#main/input_collector/example_double'\n - source: '#main/example_flag'\n id: '#main/input_collector/example_flag'\n - source: '#main/example_float'\n id: '#main/input_collector/example_float'\n - source: '#main/example_int'\n id: '#main/input_collector/example_int'\n - source: '#main/example_long'\n id: '#main/input_collector/example_long'\n - source: '#main/example_string'\n id: '#main/input_collector/example_string'\n out: ['#main/input_collector/output']\n id: '#main/input_collector'\n id: '#main'\n",
129 const createEnumCollectorWorkflow = ({workflowService}:ServiceRepository) => {
130 workflowService.create({
131 name: 'Enum values collector',
132 description: 'Workflow for collecting enum values',
133 definition: "cwlVersion: v1.0\n$graph:\n- class: CommandLineTool\n requirements:\n - listing:\n - entryname: input_collector.log\n entry: |\n \"enum_type\":\n $(inputs.enum_type)\n\n class: InitialWorkDirRequirement\n inputs:\n - type:\n type: enum\n symbols: ['#input_collector.cwl/enum_type/OTU table', '#input_collector.cwl/enum_type/Pathway\n table', '#input_collector.cwl/enum_type/Function table', '#input_collector.cwl/enum_type/Ortholog\n table']\n id: '#input_collector.cwl/enum_type'\n outputs:\n - type: File\n outputBinding:\n glob: '*'\n id: '#input_collector.cwl/output'\n baseCommand: [echo]\n id: '#input_collector.cwl'\n- class: Workflow\n doc: This is the description of the workflow\n inputs:\n - type:\n type: enum\n symbols: ['#main/enum_type/OTU table', '#main/enum_type/Pathway table', '#main/enum_type/Function\n table', '#main/enum_type/Ortholog table']\n name: '#enum_typef4179c7f-45f9-482d-a5db-1abb86698384'\n label: Enumeration Type\n doc: This should render as a drop-down menu.\n id: '#main/enum_type'\n default: OTU table\n outputs:\n - type: File\n outputSource: '#main/input_collector/output'\n id: '#main/log_file'\n steps:\n - run: '#input_collector.cwl'\n in:\n - source: '#main/enum_type'\n id: '#main/input_collector/enum_type'\n out: ['#main/input_collector/output']\n id: '#main/input_collector'\n id: '#main'\n",
137 const createSampleProcess = ({ containerRequestService }: ServiceRepository) => {
138 containerRequestService.create({
139 ownerUuid: 'c97qk-j7d0g-s3ngc1z0748hsmf',
140 name: 'Simple process 7',
141 state: ContainerRequestState.COMMITTED,
144 kind: MountKind.COLLECTION,
148 kind: MountKind.MOUNTED_FILE,
149 path: '/var/spool/cwl/cwl.output.json'
151 '/var/lib/cwl/workflow.json': {
152 kind: MountKind.JSON,
154 "cwlVersion": "v1.0",
157 "class": "CommandLineTool",
162 "entryname": "input_collector.log",
163 "entry": "$(inputs.single_file.basename)\n"
166 "class": "InitialWorkDirRequirement"
172 "id": "#input_collector.cwl/single_file"
181 "id": "#input_collector.cwl/output"
187 "id": "#input_collector.cwl"
191 "doc": "This is the description of the workflow",
195 "label": "Single File",
196 "doc": "This should allow for single File selection only.",
197 "id": "#main/single_file"
203 "outputSource": "#main/input_collector/output",
204 "id": "#main/log_file"
209 "run": "#input_collector.cwl",
212 "source": "#main/single_file",
213 "id": "#main/input_collector/single_file"
217 "#main/input_collector/output"
219 "id": "#main/input_collector"
227 '/var/lib/cwl/cwl.input.json': {
228 kind: MountKind.JSON,
232 "location": "keep:233454526794c0a2d56a305baeff3d30+145/1.txt",
238 runtimeConstraints: {
243 containerImage: 'arvados/jobs:1.1.4.20180618144723',
244 cwd: '/var/spool/cwl',
246 'arvados-cwl-runner',
249 "--project-uuid=c97qk-j7d0g-s3ngc1z0748hsmf",
250 '/var/lib/cwl/workflow.json#main',
251 '/var/lib/cwl/cwl.input.json'
253 outputPath: '/var/spool/cwl',