src/store/processes/processes-actions.ts

   1 // Copyright (C) The Arvados Authors. All rights reserved.
   2 //
   3 // SPDX-License-Identifier: AGPL-3.0
   4
   5 import { Dispatch } from "redux";
   6 import { RootState } from 'store/store';
   7 import { ServiceRepository } from 'services/services';
   8 import { updateResources } from 'store/resources/resources-actions';
   9 import { Process } from './process';
  10 import { dialogActions } from 'store/dialog/dialog-actions';
  11 import { snackbarActions, SnackbarKind } from 'store/snackbar/snackbar-actions';
  12 import { projectPanelActions } from 'store/project-panel/project-panel-action';
  13 import { navigateToRunProcess } from 'store/navigation/navigation-action';
  14 import { goToStep, runProcessPanelActions } from 'store/run-process-panel/run-process-panel-actions';
  15 import { getResource } from 'store/resources/resources';
  16 import { initialize } from "redux-form";
  17 import { RUN_PROCESS_BASIC_FORM, RunProcessBasicFormData } from "views/run-process-panel/run-process-basic-form";
  18 import { RunProcessAdvancedFormData, RUN_PROCESS_ADVANCED_FORM } from "views/run-process-panel/run-process-advanced-form";
  19 import { MOUNT_PATH_CWL_WORKFLOW, MOUNT_PATH_CWL_INPUT } from 'models/process';
  20 import { CommandInputParameter, getWorkflow, getWorkflowInputs, getWorkflowOutputs, WorkflowInputsData } from "models/workflow";
  21 import { ProjectResource } from "models/project";
  22 import { UserResource } from "models/user";
  23 import { CommandOutputParameter } from "cwlts/mappings/v1.0/CommandOutputParameter";
  24 import { ContainerResource } from "models/container";
  25 import { ContainerRequestResource } from "models/container-request";
  26
  27 export const loadProcess = (containerRequestUuid: string) =>
  28     async (dispatch: Dispatch, getState: () => RootState, services: ServiceRepository): Promise<Process | undefined> => {
  29         let containerRequest: ContainerRequestResource | undefined = undefined;
  30         try {
  31             containerRequest = await services.containerRequestService.get(containerRequestUuid);
  32             dispatch<any>(updateResources([containerRequest]));
  33         } catch {
  34             return undefined;
  35         }
  36
  37         if (containerRequest.outputUuid) {
  38             try {
  39                 const collection = await services.collectionService.get(containerRequest.outputUuid, false);
  40                 dispatch<any>(updateResources([collection]));
  41             } catch {}
  42         }
  43
  44         if (containerRequest.containerUuid) {
  45             let container: ContainerResource | undefined = undefined;
  46             try {
  47                 container = await services.containerService.get(containerRequest.containerUuid, false);
  48                 dispatch<any>(updateResources([container]));
  49             } catch {}
  50
  51             try{
  52                 if (container && container.runtimeUserUuid) {
  53                     const runtimeUser = await services.userService.get(container.runtimeUserUuid, false);
  54                     dispatch<any>(updateResources([runtimeUser]));
  55                 }
  56             } catch {}
  57
  58             return { containerRequest, container };
  59         }
  60         return { containerRequest };
  61     };
  62
  63 export const loadContainers = (filters: string, loadMounts: boolean = true) =>
  64     async (dispatch: Dispatch, getState: () => RootState, services: ServiceRepository) => {
  65         let args: any = { filters };
  66         if (!loadMounts) {
  67             args.select = containerFieldsNoMounts;
  68         }
  69         const { items } = await services.containerService.list(args);
  70         dispatch<any>(updateResources(items));
  71         return items;
  72     };
  73
  74 // Until the api supports unselecting fields, we need a list of all other fields to omit mounts
  75 const containerFieldsNoMounts = [
  76     "auth_uuid",
  77     "command",
  78     "container_image",
  79     "cost",
  80     "created_at",
  81     "cwd",
  82     "environment",
  83     "etag",
  84     "exit_code",
  85     "finished_at",
  86     "gateway_address",
  87     "href",
  88     "interactive_session_started",
  89     "kind",
  90     "lock_count",
  91     "locked_by_uuid",
  92     "log",
  93     "modified_at",
  94     "modified_by_client_uuid",
  95     "modified_by_user_uuid",
  96     "output_path",
  97     "output_properties",
  98     "output_storage_classes",
  99     "output",
 100     "owner_uuid",
 101     "priority",
 102     "progress",
 103     "runtime_auth_scopes",
 104     "runtime_constraints",
 105     "runtime_status",
 106     "runtime_user_uuid",
 107     "scheduling_parameters",
 108     "started_at",
 109     "state",
 110     "uuid",
 111 ]
 112
 113 export const cancelRunningWorkflow = (uuid: string) =>
 114     async (dispatch: Dispatch, getState: () => RootState, services: ServiceRepository) => {
 115         try {
 116             const process = await services.containerRequestService.update(uuid, { priority: 0 });
 117             return process;
 118         } catch (e) {
 119             throw new Error('Could not cancel the process.');
 120         }
 121     };
 122
 123 export const reRunProcess = (processUuid: string, workflowUuid: string) =>
 124     (dispatch: Dispatch, getState: () => RootState, services: ServiceRepository) => {
 125         const process = getResource<any>(processUuid)(getState().resources);
 126         const workflows = getState().runProcessPanel.searchWorkflows;
 127         const workflow = workflows.find(workflow => workflow.uuid === workflowUuid);
 128         if (workflow && process) {
 129             const mainWf = getWorkflow(process.mounts[MOUNT_PATH_CWL_WORKFLOW]);
 130             if (mainWf) { mainWf.inputs = getInputs(process); }
 131             const stringifiedDefinition = JSON.stringify(process.mounts[MOUNT_PATH_CWL_WORKFLOW].content);
 132             const newWorkflow = { ...workflow, definition: stringifiedDefinition };
 133
 134             const owner = getResource<ProjectResource | UserResource>(workflow.ownerUuid)(getState().resources);
 135             const basicInitialData: RunProcessBasicFormData = { name: `Copy of: ${process.name}`, description: process.description, owner };
 136             dispatch<any>(initialize(RUN_PROCESS_BASIC_FORM, basicInitialData));
 137
 138             const advancedInitialData: RunProcessAdvancedFormData = {
 139                 output: process.outputName,
 140                 runtime: process.schedulingParameters.max_run_time,
 141                 ram: process.runtimeConstraints.ram,
 142                 vcpus: process.runtimeConstraints.vcpus,
 143                 keep_cache_ram: process.runtimeConstraints.keep_cache_ram,
 144                 acr_container_image: process.containerImage
 145             };
 146             dispatch<any>(initialize(RUN_PROCESS_ADVANCED_FORM, advancedInitialData));
 147
 148             dispatch<any>(navigateToRunProcess);
 149             dispatch<any>(goToStep(1));
 150             dispatch(runProcessPanelActions.SET_STEP_CHANGED(true));
 151             dispatch(runProcessPanelActions.SET_SELECTED_WORKFLOW(newWorkflow));
 152         } else {
 153             dispatch<any>(snackbarActions.OPEN_SNACKBAR({ message: `You can't re-run this process`, kind: SnackbarKind.ERROR }));
 154         }
 155     };
 156
 157 /*
 158  * Fetches raw inputs from containerRequest mounts with fallback to properties
 159  * Returns undefined if containerRequest not loaded
 160  * Returns {} if inputs not found in mounts or props
 161  */
 162 export const getRawInputs = (data: any): WorkflowInputsData | undefined => {
 163     if (!data) { return undefined; }
 164     const mountInput = data.mounts?.[MOUNT_PATH_CWL_INPUT]?.content;
 165     const propsInput = data.properties?.cwl_input;
 166     if (!mountInput && !propsInput) { return {}; }
 167     return (mountInput || propsInput);
 168 }
 169
 170 export const getInputs = (data: any): CommandInputParameter[] => {
 171     // Definitions from mounts are needed so we return early if missing
 172     if (!data || !data.mounts || !data.mounts[MOUNT_PATH_CWL_WORKFLOW]) { return []; }
 173     const content  = getRawInputs(data) as any;
 174     // Only escape if content is falsy to allow displaying definitions if no inputs are present
 175     // (Don't check raw content length)
 176     if (!content) { return []; }
 177
 178     const inputs = getWorkflowInputs(data.mounts[MOUNT_PATH_CWL_WORKFLOW].content);
 179     return inputs ? inputs.map(
 180         (it: any) => (
 181             {
 182                 type: it.type,
 183                 id: it.id,
 184                 label: it.label,
 185                 default: content[it.id],
 186                 value: content[it.id.split('/').pop()] || [],
 187                 doc: it.doc
 188             }
 189         )
 190     ) : [];
 191 };
 192
 193 /*
 194  * Fetches raw outputs from containerRequest properties
 195  * Assumes containerRequest is loaded
 196  */
 197 export const getRawOutputs = (data: any): CommandInputParameter[] | undefined => {
 198     if (!data || !data.properties || !data.properties.cwl_output) { return undefined; }
 199     return (data.properties.cwl_output);
 200 }
 201
 202 export type InputCollectionMount = {
 203     path: string;
 204     pdh: string;
 205 }
 206
 207 export const getInputCollectionMounts = (data: any): InputCollectionMount[] => {
 208     if (!data || !data.mounts) { return []; }
 209     return Object.keys(data.mounts)
 210         .map(key => ({
 211             ...data.mounts[key],
 212             path: key,
 213         }))
 214         .filter(mount => mount.kind === 'collection' &&
 215                 mount.portable_data_hash &&
 216                 mount.path)
 217         .map(mount => ({
 218             path: mount.path,
 219             pdh: mount.portable_data_hash,
 220         }));
 221 };
 222
 223 export const getOutputParameters = (data: any): CommandOutputParameter[] => {
 224     if (!data || !data.mounts || !data.mounts[MOUNT_PATH_CWL_WORKFLOW]) { return []; }
 225     const outputs = getWorkflowOutputs(data.mounts[MOUNT_PATH_CWL_WORKFLOW].content);
 226     return outputs ? outputs.map(
 227         (it: any) => (
 228             {
 229                 type: it.type,
 230                 id: it.id,
 231                 label: it.label,
 232                 doc: it.doc
 233             }
 234         )
 235     ) : [];
 236 };
 237
 238 export const openRemoveProcessDialog = (uuid: string) =>
 239     (dispatch: Dispatch, getState: () => RootState, services: ServiceRepository) => {
 240         dispatch(dialogActions.OPEN_DIALOG({
 241             id: REMOVE_PROCESS_DIALOG,
 242             data: {
 243                 title: 'Remove process permanently',
 244                 text: 'Are you sure you want to remove this process?',
 245                 confirmButtonLabel: 'Remove',
 246                 uuid
 247             }
 248         }));
 249     };
 250
 251 export const REMOVE_PROCESS_DIALOG = 'removeProcessDialog';
 252
 253 export const removeProcessPermanently = (uuid: string) =>
 254     async (dispatch: Dispatch, getState: () => RootState, services: ServiceRepository) => {
 255         dispatch(snackbarActions.OPEN_SNACKBAR({ message: 'Removing ...', kind: SnackbarKind.INFO }));
 256         await services.containerRequestService.delete(uuid);
 257         dispatch(projectPanelActions.REQUEST_ITEMS());
 258         dispatch(snackbarActions.OPEN_SNACKBAR({ message: 'Removed.', hideDuration: 2000, kind: SnackbarKind.SUCCESS }));
 259     };