git.arvados.org - arvados-tutorial.git/tree - WGS-processing/cwl/helper/

drwxr-xr-x		..
-rw-r--r--	844	annotate-vcf.cwl	blob \| history \| raw
-rw-r--r--	1851	bwa-gatk-report-wf.cwl	blob \| history \| raw
-rw-r--r--	1142	bwa-gatk-wf.cwl	blob \| history \| raw
-rw-r--r--	1094	bwamem-samtools-view.cwl	blob \| history \| raw
-rw-r--r--	544	fastqc.cwl	blob \| history \| raw
-rw-r--r--	1698	gather-array-vcf.cwl	blob \| history \| raw
-rw-r--r--	1412	gather-vcf-try2.cwl	blob \| history \| raw
-rw-r--r--	1744	gather-vcf.cwl	blob \| history \| raw
-rw-r--r--	1098	gatk-applyBQSR.cwl	blob \| history \| raw
-rw-r--r--	1251	gatk-applyBSQR-with-interval.cwl	blob \| history \| raw
-rw-r--r--	1247	gatk-baserecalibrator-with-interval.cwl	blob \| history \| raw
-rw-r--r--	1162	gatk-baserecalibrator.cwl	blob \| history \| raw
-rw-r--r--	1293	gatk-haplotypecaller-with-interval.cwl	blob \| history \| raw
-rw-r--r--	1207	gatk-haplotypecaller.cwl	blob \| history \| raw
-rw-r--r--	983	gatk-selectvariants.cwl	blob \| history \| raw
-rw-r--r--	1045	gatk-splitintervals.cwl	blob \| history \| raw
-rw-r--r--	1306	gatk-wf-with-interval.cwl	blob \| history \| raw
-rw-r--r--	537	generate-report.cwl	blob \| history \| raw
-rw-r--r--	1115	getfastq.cwl	blob \| history \| raw
-rw-r--r--	839	getgvcfs.cwl	blob \| history \| raw
-rw-r--r--	824	gvcf-to-vcf.cwl	blob \| history \| raw
-rw-r--r--	806	mark-duplicates.cwl	blob \| history \| raw
drwxr-xr-x	-	not-in-use	tree \| history
-rw-r--r--	719	report-wf.cwl	blob \| history \| raw
-rw-r--r--	568	samtools-index.cwl	blob \| history \| raw
-rw-r--r--	680	samtools-sort.cwl	blob \| history \| raw
-rw-r--r--	1248	scatter-gatk-wf-with-interval.cwl	blob \| history \| raw