Updating cwl and yml for intervals and other changes

[arvados-tutorial.git] / WGS-processing / cwl / helper / getfastq.cwl

diff --git a/WGS-processing/cwl/helper/getfastq.cwl b/WGS-processing/cwl/helper/getfastq.cwl
index 035b4c3135695d3c1607e5d39b4e1f41fb8c6bc6..59c677112791346313f16a73c932fa66c8b6b8e5 100644 (file)
--- a/WGS-processing/cwl/helper/getfastq.cwl
+++ b/WGS-processing/cwl/helper/getfastq.cwl
@@ -41,6 +41,7 @@ expression: |
     var fastq2 = [];
     for (var i = 0; i < inputs.fastqdir.listing.length; i++) {
       var name = inputs.fastqdir.listing[i];
+      name.format = 'http://edamontology.org/format_1930'
       if (name.basename.indexOf('_1.fastq.gz') != -1 ) {
         fastq1.push(name);
       }