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Updating yml for formats
[arvados-tutorial.git]
/
WGS-processing
/
yml
/
helper
/
gatk-wf-with-interval.yml
diff --git
a/WGS-processing/yml/helper/gatk-wf-with-interval.yml
b/WGS-processing/yml/helper/gatk-wf-with-interval.yml
index 5761d1d01fa8044fb18708f7d5dd8dffc021d64d..22a9af5d9f85b827bbd3db9024f21207e831f515 100644
(file)
--- a/
WGS-processing/yml/helper/gatk-wf-with-interval.yml
+++ b/
WGS-processing/yml/helper/gatk-wf-with-interval.yml
@@
-1,13
+1,20
@@
bam:
class: File
bam:
class: File
+ format: edam:format_2572
location: keep:377c02de508dff9e4474f9a48d754933+53821/marked_dupsERR1726424.sorted.bam
location: keep:377c02de508dff9e4474f9a48d754933+53821/marked_dupsERR1726424.sorted.bam
+
reference:
class: File
reference:
class: File
+ format: edam:format_1929
location: keep:a3af04432df3d71d22f2fe8be549ba96+5974/hg38.fa
location: keep:a3af04432df3d71d22f2fe8be549ba96+5974/hg38.fa
+
intervallist:
class: File
location: keep:4d4947f6637f0acec32580e09d991967+815/0000-scattered.interval_list
intervallist:
class: File
location: keep:4d4947f6637f0acec32580e09d991967+815/0000-scattered.interval_list
+
sample: ERR1726424
sample: ERR1726424
-knownsites1:
+
+knownsites:
class: File
class: File
+ format: edam:format_3016
location: keep:7c0b13bda857fa15d88c1039182f69d5+8052/Homo_sapiens_assembly38.known_indels.vcf.gz
location: keep:7c0b13bda857fa15d88c1039182f69d5+8052/Homo_sapiens_assembly38.known_indels.vcf.gz