Adding yml files for gathering and intervals

[arvados-tutorial.git] / yml / bwamem-samtools-view.yml

diff --git a/yml/bwamem-samtools-view.yml b/yml/bwamem-samtools-view.yml
index 24f4eb419ac4404f99e050bdc41f9cc21783a80a..91e5357f8c4a7035231b9f502021da6bb099b27b 100644 (file)
--- a/yml/bwamem-samtools-view.yml
+++ b/yml/bwamem-samtools-view.yml
@@ -3,8 +3,8 @@ reference:
   location: keep:a3af04432df3d71d22f2fe8be549ba96+5974/hg38.fa
 fastq1:
   class: File
-  location: ../../bam/hu297A5D_AE2CH6SK4DG-EXT_100000_R1.fastq.gz
+  location: keep:c96565a96cd428fe92bf70e97488bd80+21857/ERR1726424_1.fastq/ERR1726424_1.fastq.gz  
 fastq2:
   class: File
-  location: ../../bam/hu297A5D_AE2CH6SK4DG-EXT_100000_R2.fastq.gz
-
+  location: keep:0ea6e3aaa6ead18a2cc4ba67a22939e9+25007/ERR1726424_2.fastq/ERR1726424_2.fastq.gz
+sample: ERR1726424