projects
/
arvados-tutorial.git
/ blobdiff
summary
|
shortlog
|
log
|
commit
|
commitdiff
|
tree
raw
|
inline
| side by side
Adding yml files for gathering and intervals
[arvados-tutorial.git]
/
yml
/
bwamem-samtools-view.yml
diff --git
a/yml/bwamem-samtools-view.yml
b/yml/bwamem-samtools-view.yml
index 24f4eb419ac4404f99e050bdc41f9cc21783a80a..91e5357f8c4a7035231b9f502021da6bb099b27b 100644
(file)
--- a/
yml/bwamem-samtools-view.yml
+++ b/
yml/bwamem-samtools-view.yml
@@
-3,8
+3,8
@@
reference:
location: keep:a3af04432df3d71d22f2fe8be549ba96+5974/hg38.fa
fastq1:
class: File
location: keep:a3af04432df3d71d22f2fe8be549ba96+5974/hg38.fa
fastq1:
class: File
- location:
../../bam/hu297A5D_AE2CH6SK4DG-EXT_100000_R1.fastq.gz
+ location:
keep:c96565a96cd428fe92bf70e97488bd80+21857/ERR1726424_1.fastq/ERR1726424_1.fastq.gz
fastq2:
class: File
fastq2:
class: File
- location:
../../bam/hu297A5D_AE2CH6SK4DG-EXT_100000_R
2.fastq.gz
-
+ location:
keep:0ea6e3aaa6ead18a2cc4ba67a22939e9+25007/ERR1726424_2.fastq/ERR1726424_
2.fastq.gz
+sample: ERR1726424