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Updating to allow for two vcfs of known sites
[arvados-tutorial.git]
/
WGS-processing
/
yml
/
wgs-processing-wf.yml
diff --git
a/WGS-processing/yml/wgs-processing-wf.yml
b/WGS-processing/yml/wgs-processing-wf.yml
index 299a674eaa08056538c86d0745dabd6e80dea04f..49ac46d80ed6440bc6c9fa84019b31130c7f46d8 100644
(file)
--- a/
WGS-processing/yml/wgs-processing-wf.yml
+++ b/
WGS-processing/yml/wgs-processing-wf.yml
@@
-32,7
+32,12
@@
tailhtml:
scattercount: '20'
scattercount: '20'
-knownsites:
+knownsites1:
+ class: File
+ format: edam:format_3016
+ location: keep:7c0b13bda857fa15d88c1039182f69d5+8052/Homo_sapiens_assembly38.dbsnp138.vcf
+
+knownsites2:
class: File
format: edam:format_3016
location: keep:7c0b13bda857fa15d88c1039182f69d5+8052/Homo_sapiens_assembly38.known_indels.vcf.gz
class: File
format: edam:format_3016
location: keep:7c0b13bda857fa15d88c1039182f69d5+8052/Homo_sapiens_assembly38.known_indels.vcf.gz