reference:
  class: File
  format: edam:format_1929
  location: keep:5eac1d1c03ff6404226421a8d8351cf1+6133/GRCh38_no_alt_plus_hs38d1_analysis_set.fna 

fullintervallist:
  class: File
  location: /data-sdd/pgp/testdata/full-noalt-scattered.interval_list

fastqdir:
  class: Directory
  location: keep:5e1324428f93c5e41aeb3d7b676de34c+186978 

clinvarvcf:
  class: File
  format: edam:format_3016
  location: keep:242ba3b9049aee86ab2c72db4f3b2822+223/38/clinvar.vcf.gz

reportfunc:
  class: File
  location: ../src/annotation/generatereport.py

headhtml:
  class: File
  format: edam:format_2331
  location: ../src/annotation/head.html

tailhtml:
  class: File
  format: edam:format_2331
  location: ../src/annotation/tail.html

scattercount: '20'

knownsites1:
  class: File
  format: edam:format_3016
  location: keep:7c0b13bda857fa15d88c1039182f69d5+8052/Homo_sapiens_assembly38.dbsnp138.vcf 

knownsites2:
  class: File
  format: edam:format_3016
  location: keep:7c0b13bda857fa15d88c1039182f69d5+8052/Homo_sapiens_assembly38.known_indels.vcf.gz