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updating for metadata and yml to check command line cwl
[arvados-tutorial.git]
/
WGS-processing
/
cwl
/
helper
/
gatk-wf-with-interval.cwl
diff --git
a/WGS-processing/cwl/helper/gatk-wf-with-interval.cwl
b/WGS-processing/cwl/helper/gatk-wf-with-interval.cwl
index ef902099c066015699866acad47b4129da3ffcc1..cf815a5178cb9ab03c769f5acc11de7fe5f8fd8e 100644
(file)
--- a/
WGS-processing/cwl/helper/gatk-wf-with-interval.cwl
+++ b/
WGS-processing/cwl/helper/gatk-wf-with-interval.cwl
@@
-1,6
+1,6
@@
cwlVersion: v1.1
class: Workflow
cwlVersion: v1.1
class: Workflow
-label: Variant calling workflow for
single
interval
+label: Variant calling workflow for
given
interval
requirements:
- class: SubworkflowFeatureRequirement
requirements:
- class: SubworkflowFeatureRequirement
@@
-41,7
+41,7
@@
outputs:
gvcf:
type: File
format: edam:format_3016 # GVCF
gvcf:
type: File
format: edam:format_3016 # GVCF
- label:
single
interval filtered GVCF
+ label:
Given
interval filtered GVCF
outputSource: selectvariants/filteredgvcf
steps:
outputSource: selectvariants/filteredgvcf
steps: