git.arvados.org - arvados-tutorial.git/tree - WGS-processing/cwl/helper/

drwxr-xr-x		..
-rw-r--r--	880	annotate-vcf.cwl	blob \| history \| raw
-rw-r--r--	3201	bwamem-gatk-report-wf.cwl	blob \| history \| raw
-rw-r--r--	1978	bwamem-samtools-view.cwl	blob \| history \| raw
-rw-r--r--	1284	fastqc.cwl	blob \| history \| raw
-rw-r--r--	1698	gather-array-vcf.cwl	blob \| history \| raw
-rw-r--r--	1744	gather-vcf.cwl	blob \| history \| raw
-rw-r--r--	2001	gatk-applyBSQR-with-interval.cwl	blob \| history \| raw
-rw-r--r--	2020	gatk-baserecalibrator-with-interval.cwl	blob \| history \| raw
-rw-r--r--	1984	gatk-haplotypecaller-with-interval.cwl	blob \| history \| raw
-rw-r--r--	1681	gatk-selectvariants.cwl	blob \| history \| raw
-rw-r--r--	1643	gatk-splitintervals.cwl	blob \| history \| raw
-rw-r--r--	2033	gatk-wf-with-interval.cwl	blob \| history \| raw
-rw-r--r--	537	generate-report.cwl	blob \| history \| raw
-rw-r--r--	1823	getfastq.cwl	blob \| history \| raw
-rw-r--r--	824	gvcf-to-vcf.cwl	blob \| history \| raw
-rw-r--r--	1404	mark-duplicates.cwl	blob \| history \| raw
drwxr-xr-x	-	not-in-use	tree \| history
-rw-r--r--	753	report-wf.cwl	blob \| history \| raw
-rw-r--r--	1164	samtools-index.cwl	blob \| history \| raw
-rw-r--r--	1267	samtools-sort.cwl	blob \| history \| raw
-rw-r--r--	1913	scatter-gatk-wf-with-interval.cwl	blob \| history \| raw