Switching variable knownsites1 to knownsites

[arvados-tutorial.git] / WGS-processing / cwl / helper / scatter-gatk-wf-with-interval.cwl

diff --git a/WGS-processing/cwl/helper/scatter-gatk-wf-with-interval.cwl b/WGS-processing/cwl/helper/scatter-gatk-wf-with-interval.cwl
index 45653db5fb11364034e3ead3a1c5d8fc508afe3b..2cf48b5f3943b319885af8d207ee43fc02147f0f 100644 (file)
--- a/WGS-processing/cwl/helper/scatter-gatk-wf-with-interval.cwl
+++ b/WGS-processing/cwl/helper/scatter-gatk-wf-with-interval.cwl
@@ -28,7 +28,7 @@ inputs:
   sample: 
     type: string
     label: Sample Name
-  knownsites1:
+  knownsites:
     type: File
     format: edam:format_3016 # VCF
     label: VCF of known polymorphic sites for BQSR
@@ -63,7 +63,7 @@ steps:
       bam: bam
       reference: reference
       sample: sample
-      knownsites1: knownsites1
+      knownsites: knownsites
       intervallist: splitintervals/intervalfiles
     out: [gvcf]