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Switching variable knownsites1 to knownsites
[arvados-tutorial.git]
/
WGS-processing
/
cwl
/
helper
/
scatter-gatk-wf-with-interval.cwl
diff --git
a/WGS-processing/cwl/helper/scatter-gatk-wf-with-interval.cwl
b/WGS-processing/cwl/helper/scatter-gatk-wf-with-interval.cwl
index 45653db5fb11364034e3ead3a1c5d8fc508afe3b..2cf48b5f3943b319885af8d207ee43fc02147f0f 100644
(file)
--- a/
WGS-processing/cwl/helper/scatter-gatk-wf-with-interval.cwl
+++ b/
WGS-processing/cwl/helper/scatter-gatk-wf-with-interval.cwl
@@
-28,7
+28,7
@@
inputs:
sample:
type: string
label: Sample Name
sample:
type: string
label: Sample Name
- knownsites
1
:
+ knownsites:
type: File
format: edam:format_3016 # VCF
label: VCF of known polymorphic sites for BQSR
type: File
format: edam:format_3016 # VCF
label: VCF of known polymorphic sites for BQSR
@@
-63,7
+63,7
@@
steps:
bam: bam
reference: reference
sample: sample
bam: bam
reference: reference
sample: sample
- knownsites
1: knownsites1
+ knownsites
: knownsites
intervallist: splitintervals/intervalfiles
out: [gvcf]
intervallist: splitintervals/intervalfiles
out: [gvcf]