Updating to take a directory

[arvados-tutorial.git] / RNA-Seq / cwl / helper / samtools_index.cwl

diff --git a/RNA-Seq/cwl/helper/samtools_index.cwl b/RNA-Seq/cwl/helper/samtools_index.cwl
index 3ae2e9b1e1b8ef8d1680eece88d0af5aff9f57d0..5d0a2de6457a33461426c71eca9147f982213330 100755 (executable)
--- a/RNA-Seq/cwl/helper/samtools_index.cwl
+++ b/RNA-Seq/cwl/helper/samtools_index.cwl
@@ -32,11 +32,6 @@ outputs:
   bam_sorted_indexed:
     type: File
     secondaryFiles: .bai
-    format: edam:format_2572  # BAM 
     outputBinding:
       glob: $(inputs.bam_sorted.basename)
       
-$namespaces:
-  edam: https://edamontology.org/
-$schemas:
-  - https://edamontology.org/EDAM_1.18.owl