version: [ "0.11.9" ]
inputs:
- fastq1:
+ fastq1:
type: File
format: edam:format_1930 # FASTQ
label: One of set of pair-end FASTQs (R1)
- fastq2:
+ fastq2:
type: File
format: edam:format_1930 # FASTQ
label: One of set of pair-end FASTQs (R2)
out-html:
type: File[]
label: FASTQ QC reports
- format: edam:format_1964 # HTML
+ format: edam:format_2331 # HTML
outputBinding:
glob: "*html"
out-zip:
outputBinding:
glob: "*fastqc.zip"
-baseCommand: fastqc
+baseCommand: fastqc
arguments:
- $(inputs.fastq1.path)