Updating yml for formats

[arvados-tutorial.git] / WGS-processing / yml / helper / gatk-haplotypecaller-with-interval.yml

diff --git a/WGS-processing/yml/helper/gatk-haplotypecaller-with-interval.yml b/WGS-processing/yml/helper/gatk-haplotypecaller-with-interval.yml
index 4c42573c9bd6228e8b702a25e2fe0a5465fbcd56..b46c700adaad691a84f675f81a97c497320a9b93 100644 (file)
--- a/WGS-processing/yml/helper/gatk-haplotypecaller-with-interval.yml
+++ b/WGS-processing/yml/helper/gatk-haplotypecaller-with-interval.yml
@@ -1,10 +1,15 @@
 bam:
   class: File
 bam:
   class: File

+  format: edam:format_2572

   location: keep:377c02de508dff9e4474f9a48d754933+53821/marked_dupsERR1726424.sorted.bam 
   location: keep:377c02de508dff9e4474f9a48d754933+53821/marked_dupsERR1726424.sorted.bam 

+

 reference:
   class: File
 reference:
   class: File

+  format: edam:format_1929

   location: keep:a3af04432df3d71d22f2fe8be549ba96+5974/hg38.fa
   location: keep:a3af04432df3d71d22f2fe8be549ba96+5974/hg38.fa

+

 intervallist:
   class: File
   location: keep:4d4947f6637f0acec32580e09d991967+815/0000-scattered.interval_list
 intervallist:
   class: File
   location: keep:4d4947f6637f0acec32580e09d991967+815/0000-scattered.interval_list

+

 sample: ERR1726424
 sample: ERR1726424