Bugfix .bai secondary file for ApplyBSQR behavior

[arvados-tutorial.git] / WGS-processing / cwl / helper / annotate-vcf.cwl

diff --git a/WGS-processing/cwl/helper/annotate-vcf.cwl b/WGS-processing/cwl/helper/annotate-vcf.cwl
index 41ec58cd35fab6638dd47f2bf078e8d3a032c55a..1e028c4adebba781620f27671f3e793575804561 100644 (file)
--- a/WGS-processing/cwl/helper/annotate-vcf.cwl
+++ b/WGS-processing/cwl/helper/annotate-vcf.cwl
@@ -3,9 +3,9 @@ class: CommandLineTool
 label: Annotate and filter VCF
 
 requirements:
-  - class: DockerRequirement
+  DockerRequirement:
     dockerPull: curii/clinvar-report
-  - class: ShellCommandRequirement
+  ShellCommandRequirement: {}
 
 hints:
   ResourceRequirement:
@@ -56,6 +56,6 @@ $namespaces:
  s: https://schema.org/
  edam: http://edamontology.org/
 
-$schemas:
- - https://schema.org/version/latest/schema.rdf
- - http://edamontology.org/EDAM_1.18.owl
+#$schemas:
+# - https://schema.org/version/latest/schema.rdf
+# - http://edamontology.org/EDAM_1.18.owl