git.arvados.org - arvados-tutorial.git/tree - WGS-processing/cwl/helper/

drwxr-xr-x		..
-rw-r--r--	1354	annotate-vcf.cwl	blob \| history \| raw
-rw-r--r--	3483	bwamem-gatk-report-wf.cwl	blob \| history \| raw
-rw-r--r--	1968	bwamem-samtools-view.cwl	blob \| history \| raw
-rw-r--r--	1188	fastqc.cwl	blob \| history \| raw
-rw-r--r--	2193	gather-array-vcf.cwl	blob \| history \| raw
-rw-r--r--	2172	gather-vcf.cwl	blob \| history \| raw
-rw-r--r--	1929	gatk-applyBSQR-with-interval.cwl	blob \| history \| raw
-rw-r--r--	2149	gatk-baserecalibrator-with-interval.cwl	blob \| history \| raw
-rw-r--r--	1965	gatk-haplotypecaller-with-interval.cwl	blob \| history \| raw
-rw-r--r--	1681	gatk-selectvariants.cwl	blob \| history \| raw
-rw-r--r--	1788	gatk-splitintervals.cwl	blob \| history \| raw
-rw-r--r--	2193	gatk-wf-with-interval.cwl	blob \| history \| raw
-rw-r--r--	1067	generate-report.cwl	blob \| history \| raw
-rw-r--r--	1882	getfastq.cwl	blob \| history \| raw
-rw-r--r--	1452	gvcf-to-vcf.cwl	blob \| history \| raw
-rw-r--r--	1399	mark-duplicates.cwl	blob \| history \| raw
drwxr-xr-x	-	not-in-use	tree \| history
-rw-r--r--	1462	report-wf.cwl	blob \| history \| raw
-rw-r--r--	1158	samtools-index.cwl	blob \| history \| raw
-rw-r--r--	1259	samtools-sort.cwl	blob \| history \| raw
-rw-r--r--	2166	scatter-gatk-wf-with-interval.cwl	blob \| history \| raw