cwl/generate-report.cwl

   1 cwlVersion: v1.1
   2 class: CommandLineTool
   3
   4 requirements:
   5   DockerRequirement:
   6     dockerPull: curii/clinvar-report
   7
   8 hints:
   9   ResourceRequirement:
  10     ramMin: 10000
  11     coresMin: 4
  12
  13 baseCommand: python
  14
  15 arguments:
  16   - $(inputs.reportfunc)
  17   - $(inputs.sampletxt)
  18   - $(inputs.sampletxt.basename)
  19   - $(inputs.headhtml)
  20   - $(inputs.tailhtml)
  21
  22 inputs:
  23   reportfunc:
  24     type: File
  25   sampletxt:
  26     type: File
  27   headhtml:
  28     type: File
  29   tailhtml:
  30     type: File
  31
  32 outputs:
  33   report:
  34     type: File
  35     outputBinding:
  36       glob: "*html"