3 label: Converts gvcf to vcf
6 - class: DockerRequirement
7 dockerPull: curii/clinvar-report
8 - class: ShellCommandRequirement
26 secondaryFiles: [.tbi]
35 valueFrom: "AVG(GQ)>20"
38 valueFrom: $(inputs.samplename).vcf
39 - {valueFrom: '&&', shellQuote: false}
41 - valueFrom: $(inputs.samplename).vcf
42 - {valueFrom: '&&', shellQuote: false}
44 - valueFrom: $(inputs.samplename).vcf.gz