5 arv: "http://arvados.org/cwl#"
6 cwltool: "http://commonwl.org/cwltool#"
10 dockerPull: curii/bwa-samtools-picard
11 ShellCommandRequirement: {}
12 InitialWorkDirRequirement:
20 arv:RuntimeConstraints:
22 outputDirType: keep_output_dir
40 - $(inputs.bam.basename)
44 - $(inputs.sample).sorted.bam