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Updating CWL for overarching workflow
[arvados-tutorial.git]
/
yml
/
bwa-gatk-wf.yml
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sample: hu297A5D_AE2CH6SK4DG
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reference:
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class: File
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location: keep:a3af04432df3d71d22f2fe8be549ba96+5974/hg38.fa
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fastq1:
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class: File
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location: ../../bam/hu297A5D_AE2CH6SK4DG-EXT_100000_R1.fastq.gz
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fastq2:
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class: File
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location: ../../bam/hu297A5D_AE2CH6SK4DG-EXT_100000_R2.fastq.gz
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