2 arv: "http://arvados.org/cwl#"
3 cwltool: "http://commonwl.org/cwltool#"
6 label: Create array of gvcfs to process
8 InlineJavascriptRequirement: {}
12 label: Input directory of gvcfs
13 loadListing: 'shallow_listing'
20 for (var i = 0; i < inputs.gvcfdir.listing.length; i++) {
21 var name = inputs.gvcfdir.listing[i];
22 if (name.nameext ==='.gz' ) {
23 samples.push(name.basename);
26 samples = samples.sort();
29 for (var i = 0; i < samples.length; i++) {
31 sampleinput = sampleinput + "-I " + s1 + " "
35 return {"sampleinput": sampleinput};