WGS-processing/yml/helper/gatk-wf-with-interval.yml

   1 bam:
   2   class: File
   3   location: keep:377c02de508dff9e4474f9a48d754933+53821/marked_dupsERR1726424.sorted.bam
   4
   5 reference:
   6   class: File
   7   location: keep:a3af04432df3d71d22f2fe8be549ba96+5974/hg38.fa
   8
   9 intervallist:
  10   class: File
  11   location: keep:4d4947f6637f0acec32580e09d991967+815/0000-scattered.interval_list
  12
  13 sample: ERR1726424
  14
  15 knownsites:
  16   class: File
  17   location: keep:7c0b13bda857fa15d88c1039182f69d5+8052/Homo_sapiens_assembly38.known_indels.vcf.gz