22 outputSource: fastqc/out-html
25 outputSource: fastqc/out-zip
28 outputSource: haplotypecaller/vcf
36 out: [out-html, out-zip]
38 run: bwamem-samtools-view.cwl
46 run: samtools-sort.cwl
48 bam: bwamem-samtools-view/bam
52 run: samtools-index.cwl
54 bam: samtools-sort/out
57 run: gatk-haplotypecaller.cwl
60 bam: samtools-index/out