3 label: Sorting Bam file
6 arv: "http://arvados.org/cwl#"
7 cwltool: "http://commonwl.org/cwltool#"
11 dockerPull: curii/bwa-samtools-picard
12 ShellCommandRequirement: {}
13 InitialWorkDirRequirement:
21 arv:RuntimeConstraints:
23 outputDirType: keep_output_dir
41 - $(inputs.bam.basename)
45 - $(inputs.sample).sorted.bam