5 - class: SubworkflowFeatureRequirement
25 outputSource: fastqc/out-html
28 outputSource: fastqc/out-zip
31 outputSource: haplotypecaller/vcf
39 out: [out-html, out-zip]
41 run: bwamem-samtools-view.cwl
49 run: samtools-sort.cwl
51 bam: bwamem-samtools-view/bam
55 run: samtools-index.cwl
57 bam: samtools-sort/out
60 run: gatk-haplotypecaller.cwl
63 bam: samtools-index/out