+#!/bin/bash
+
+if [[ "$DEBUG" == "--debug" ]]; then
+ set -x
+fi
+
+testReady() {
+ loadK8sIP
+ set +e
+ ready=0
+ k8sReady=0
+ apiReady=0
+ keepProxyReady=0
+
+ # Is k8s ready?
+ if [[ -n "$K8S_IP" ]]; then
+ k8sReady=1
+ else
+ set -e
+ return
+ fi
+
+ # Is the Arvados API server ready?
+ curl --connect-timeout 1 -k -s -H "Authorization: Bearer $MANAGEMENTTOKEN" https://$K8S_IP:444/rails/_health/ping |grep -q OK
+ if [[ $? -eq 0 ]]; then
+ apiReady=1
+ else
+ set -e
+ return
+ fi
+
+ # Is the Arvados Keep proxy ready?
+ curl --connect-timeout 1 -k -s -H "Authorization: Bearer $MANAGEMENTTOKEN" https://$K8S_IP:25107/_health/ping |grep -q OK
+ if [[ $? -eq 0 ]]; then
+ keepProxyReady=1
+ else
+ set -e
+ return
+ fi
+
+ # Everything is working
+ ready=1
+ set -e
+}
+
+stopCluster() {
+ echo "Stopping Arvados cluster..."
+ cd $MY_PATH/../charts/arvados
+ helm delete arvados
+
+ stopK8s
+}
+
+kubectlStatus() {
+ echo "Current k8s status:"
+ echo "services:"
+ kubectl get svc
+ echo "pods:"
+ kubectl get pods
+ echo
+}
+
+startCluster() {
+ startK8s
+
+ echo "Starting Arvados cluster..."
+ cd $MY_PATH/../charts/arvados
+ ./cert-gen.sh "$K8S_IP"
+
+ helm install arvados . --set externalIP="$K8S_IP"
+
+ if [[ "$CLUSTERTYPE" == "minikube" ]]; then
+ ./minikube-external-ip.sh
+ fi
+
+ awaitHealthOK
+}
+
+awaitHealthOK() {
+ echo "Waiting for cluster health OK..."
+ while [ $ready -ne 1 ]; do
+ testReady
+ kubectlStatus
+ sleep 2
+ done
+}
+
+run() {
+ MY_PATH=`pwd`
+ MANAGEMENTTOKEN=`cat $MY_PATH/../charts/arvados/config/config.yml |grep Management |cut -f2 -d ':' |sed -e 's/ //'`
+ date
+ testReady
+ if [[ $ready -ne 1 ]]; then
+ startCluster
+ else
+ if [[ "$CLUSTERTYPE" == "GKE" ]]; then
+ # create the necessary kubectl context for the running cluster
+ gcloud container clusters get-credentials arvados --zone us-central1-a
+ kubectlStatus
+ fi
+ fi
+
+ date
+ echo "cluster health OK"
+
+ export ARVADOS_API_HOST=$K8S_IP:444
+ export ARVADOS_API_HOST_INSECURE=true
+ export ARVADOS_API_TOKEN=`grep superUserSecret $MY_PATH/../charts/arvados/values.yaml |cut -f2 -d\"`
+
+ cd $MY_PATH/cwl-diagnostics-hasher/
+
+ echo "uploading requirements for CWL hasher"
+ arv-put 4xphq-8i9sb-fmwod1qn74cemdp.log.txt --no-resume
+ echo "uploading Arvados jobs image for CWL hasher"
+ # just in case, clear the arv-put cache first, arv-keepdocker doesn't pass through --no-resume
+ rm -rf ~/.cache/arvados/arv-put
+ echo "running CWL hasher"
+ cwl-runner hasher-workflow.cwl hasher-workflow-job.yml
+ if [[ $? -eq 0 ]]; then
+ echo "Success!"
+ else
+ echo "Test failed!"
+ fi
+
+ stopCluster
+}