echo $WORKSPACE
-# clean up existing docker containers and images
-docker.io stop $(docker.io ps -a -q)
-docker.io rm $(docker.io ps -a -q)
-docker.io rmi $(docker.io images -q)
+# DOCKER
+title "Starting docker build"
-# clean up build files so we can re-build
-rm -f $WORKSPACE/docker/*-image
+# clean up the docker build environment
+cd "$WORKSPACE"
+cd docker
+./build.sh realclean
-rm -f docker/config.yml
+rm -f config.yml
# Get test config.yml file
-cp $HOME/docker/config.yml docker/
+cp $HOME/docker/config.yml .
-# DOCS
-title "Starting docker build"
-cd "$WORKSPACE"
-cd docker
./build.sh
ECODE=$?
title "docker build complete"
+title "Starting docker java-bwa-samtools build"
+
+./build.sh java-bwa-samtools-image
+
+ECODE=$?
+
+if [[ "$ECODE" != "0" ]]; then
+ title "!!!!!! docker java-bwa-samtools BUILD FAILED !!!!!!"
+ EXITCODE=$(($EXITCODE + $ECODE))
+fi
+
+title "docker build java-bwa-samtools complete"
+
exit $EXITCODE