#!/bin/bash
-EXITCODE=0
-CALL_PRM=0
-APTUSER=$1
-APTSERVER=$2
+read -rd "\000" helpmessage <<EOF
+$(basename $0): Build Arvados packages and (optionally) upload them.
-if [[ "$APTUSER" == '' ]]; then
- echo "Syntax: $0 <aptuser> <aptserver>"
- exit 1
-fi
+Syntax:
+ WORKSPACE=/path/to/arvados $(basename $0) [options]
-if [[ "$APTSERVER" == '' ]]; then
- echo "Syntax: $0 <aptuser> <aptserver>"
- exit 1
-fi
+Options:
-source /etc/profile.d/rvm.sh
-echo $WORKSPACE
+--upload Upload packages (default: false)
+--scp-user USERNAME Scp user for apt server (only required when --upload is specified)
+--apt-server HOSTNAME Apt server hostname (only required when --upload is specified)
+--debug Output debug information (default: false)
-# Build arvados GEM
-echo "Build and publish ruby gem"
-cd "$WORKSPACE"
-cd sdk/ruby
-# clean up old gems
-rm -f arvados-*gem
-gem build arvados.gemspec
-# publish new gem
-gem push arvados-*gem
+WORKSPACE=path Path to the Arvados source tree to build packages from
-# Build arvados-cli GEM
-echo "Build and publish ruby gem"
-cd "$WORKSPACE"
-cd sdk/cli
-# clean up old gems
-rm -f arvados-cli*gem
-gem build arvados-cli.gemspec
-# publish new gem
-gem push arvados-cli*gem
+EOF
-# Build arvados-python-client Python package
-echo "Build and publish arvados-python-client package"
-cd "$WORKSPACE"
+EXITCODE=0
+CALL_FREIGHT=0
+
+DEBUG=0
+UPLOAD=0
+
+while [[ -n "$1" ]]
+do
+ arg="$1"; shift
+ case "$arg" in
+ --help)
+ echo >&2 "$helpmessage"
+ echo >&2
+ exit 1
+ ;;
+ --scp-user)
+ APTUSER="$1"; shift
+ ;;
+ --apt-server)
+ APTSERVER="$1"; shift
+ ;;
+ --debug)
+ DEBUG=1
+ ;;
+ --upload)
+ UPLOAD=1
+ ;;
+ *)
+ echo >&2 "$0: Unrecognized option: '$arg'. Try: $0 --help"
+ exit 1
+ ;;
+ esac
+done
+
+# Sanity checks
+if [[ "$UPLOAD" != '0' && ("$APTUSER" == '' || "$APTSERVER" == '') ]]; then
+ echo >&2 "$helpmessage"
+ echo >&2
+ echo >&2 "Error: please specify --scp-user and --apt-server if --upload is set"
+ echo >&2
+ exit 1
+fi
-GIT_HASH=`git log --format=format:%ct.%h -n1 .`
+# Sanity check
+if ! [[ -n "$WORKSPACE" ]]; then
+ echo >&2 "$helpmessage"
+ echo >&2
+ echo >&2 "Error: WORKSPACE environment variable not set"
+ echo >&2
+ exit 1
+fi
-cd sdk/python
+# Test for fpm
+fpm --version >/dev/null 2>&1
-# We mess with this file below, reset it here
-git checkout setup.py
+if [[ "$?" != 0 ]]; then
+ echo >&2 "$helpmessage"
+ echo >&2
+ echo >&2 "Error: fpm not found"
+ echo >&2
+ exit 1
+fi
-# Make sure only to use sdist - that's the only format pip can deal with (sigh)
-python setup.py egg_info -b ".$GIT_HASH" sdist upload
+if [[ "$DEBUG" != 0 ]]; then
+ echo "Workspace is $WORKSPACE"
+fi
-cd ../../services/fuse
+version_from_git() {
+ # Generates a version number from the git log for the current working
+ # directory, and writes it to stdout.
+ local git_ts git_hash
+ declare $(TZ=UTC git log -n1 --first-parent --max-count=1 \
+ --format=format:"git_ts=%ct git_hash=%h" .)
+ echo "0.1.$(date -ud "@$git_ts" +%Y%m%d%H%M%S).$git_hash"
+}
-# We mess with this file below, reset it here
-git checkout setup.py
+timestamp_from_git() {
+ # Generates a version number from the git log for the current working
+ # directory, and writes it to stdout.
+ local git_ts git_hash
+ declare $(TZ=UTC git log -n1 --first-parent --max-count=1 \
+ --format=format:"git_ts=%ct git_hash=%h" .)
+ echo "$git_ts"
+}
-# Make sure only to use sdist - that's the only format pip can deal with (sigh)
-python setup.py egg_info -b ".$GIT_HASH" sdist upload
+handle_python_package () {
+ # This function assumes the current working directory is the python package directory
+ if [[ "$UPLOAD" != 0 ]]; then
+ # Make sure only to use sdist - that's the only format pip can deal with (sigh)
+ if [[ "$DEBUG" != 0 ]]; then
+ python setup.py sdist upload
+ else
+ python setup.py -q sdist upload
+ fi
+ else
+ # Make sure only to use sdist - that's the only format pip can deal with (sigh)
+ if [[ "$DEBUG" != 0 ]]; then
+ python setup.py sdist
+ else
+ python setup.py -q sdist
+ fi
+ fi
+}
# Build debs for everything
-
-# Build arvados src deb package
-
build_and_scp_deb () {
+ # The package source. Depending on the source type, this can be a
+ # path, or the name of the package in an upstream repository (e.g.,
+ # pip).
PACKAGE=$1
- PACKAGE_NAME=$2
- # Put spaces in $3 and you will regret it. Despite the use of arrays below.
- # Because, bash sucks.
- VENDOR=${3// /_}
- PACKAGE_TYPE=$4
- EXTRA_ARGUMENTS=$5
+ shift
+ # The name of the package to build. Defaults to $PACKAGE.
+ PACKAGE_NAME=$1
+ shift
+ # Optional: the vendor of the package. Should be "Curoverse, Inc." for
+ # packages of our own software. Passed to fpm --vendor.
+ VENDOR=$1
+ shift
+ # The type of source package. Passed to fpm -s. Default "python".
+ PACKAGE_TYPE=$1
+ shift
+ # Optional: the package version number. Passed to fpm -v.
+ VERSION=$1
+ shift
if [[ "$PACKAGE_NAME" == "" ]]; then
PACKAGE_NAME=$PACKAGE
PACKAGE_TYPE='python'
fi
- COMMAND_ARR=("fpm" "-s" "$PACKAGE_TYPE" "-t" "deb")
+ declare -a COMMAND_ARR=("fpm" "--maintainer=Ward Vandewege <ward@curoverse.com>" "-s" "$PACKAGE_TYPE" "-t" "deb" "-x" "usr/local/lib/python2.7/dist-packages/tests")
if [[ "$PACKAGE_NAME" != "$PACKAGE" ]]; then
COMMAND_ARR+=('-n' "$PACKAGE_NAME")
if [[ "$VENDOR" != "" ]]; then
COMMAND_ARR+=('--vendor' "$VENDOR")
fi
- for a in $EXTRA_ARGUMENTS; do
- COMMAND_ARR+=("$a")
+
+ if [[ "$VERSION" != "" ]]; then
+ COMMAND_ARR+=('-v' "$VERSION")
+ fi
+
+ # Append remaining function arguments directly to fpm's command line.
+ for i; do
+ COMMAND_ARR+=("$i")
done
COMMAND_ARR+=("$PACKAGE")
- FPM_RESULTS=$(${COMMAND_ARR[@]})
+ if [[ "$DEBUG" != 0 ]]; then
+ echo
+ echo "${COMMAND_ARR[@]}"
+ echo
+ fi
+
+ FPM_RESULTS=$("${COMMAND_ARR[@]}")
FPM_EXIT_CODE=$?
- echo ${COMMAND_ARR[@]}
- if [[ ! $FPM_RESULTS =~ "File already exists" ]]; then
- if [[ "$FPM_EXIT_CODE" != "0" ]]; then
- echo "Error building debian package for $1:\n $FPM_RESULTS"
+
+ FPM_PACKAGE_NAME=''
+ if [[ $FPM_RESULTS =~ ([A-Za-z0-9_\-.]*\.deb) ]]; then
+ FPM_PACKAGE_NAME=${BASH_REMATCH[1]}
+ fi
+
+ if [[ "$FPM_PACKAGE_NAME" == "" ]]; then
+ EXITCODE=1
+ echo "Error: $PACKAGE: Unable to figure out package name from fpm results:"
+ echo
+ echo $FPM_RESULTS
+ echo
+ else
+ if [[ ! $FPM_RESULTS =~ "File already exists" ]]; then
+ if [[ "$FPM_EXIT_CODE" != "0" ]]; then
+ echo "Error building debian package for $1:\n $FPM_RESULTS"
+ else
+ if [[ "$UPLOAD" != 0 ]]; then
+ scp -P2222 $FPM_PACKAGE_NAME $APTUSER@$APTSERVER:tmp/
+ CALL_FREIGHT=1
+ fi
+ fi
else
- scp -P2222 $PACKAGE_NAME*.deb $APTUSER@$APTSERVER:tmp/
- CALL_PRM=1
+ echo "Debian package $FPM_PACKAGE_NAME exists, not rebuilding"
fi
- else
- echo "Debian package for $1 exists, not rebuilding"
fi
}
+if [[ -f /etc/profile.d/rvm.sh ]]; then
+ source /etc/profile.d/rvm.sh
+fi
+
+# Make all files world-readable -- jenkins runs with umask 027, and has checked
+# out our git tree here
+chmod o+r "$WORKSPACE" -R
+
+# More cleanup - make sure all executables that we'll package are 755
+find -type d -name 'bin' |xargs -I {} find {} -type f |xargs -I {} chmod 755 {}
+
+# Now fix our umask to something better suited to building and publishing
+# gems and packages
+umask 0022
+
+if [[ "$DEBUG" != 0 ]]; then
+ echo "umask is" `umask`
+fi
+
+# Perl packages
+if [[ "$DEBUG" != 0 ]]; then
+ echo -e "\nPerl packages\n"
+fi
+
+if [[ "$DEBUG" != 0 ]]; then
+ PERL_OUT=/dev/stdout
+else
+ PERL_OUT=/dev/null
+fi
+
+cd "$WORKSPACE/sdk/perl"
+
+if [[ -e Makefile ]]; then
+ make realclean >"$PERL_OUT"
+fi
+find -maxdepth 1 \( -name 'MANIFEST*' -or -name 'libarvados-perl_*.deb' \) \
+ -delete
+rm -rf install
+
+perl Makefile.PL >"$PERL_OUT" && \
+ make install PREFIX=install INSTALLDIRS=perl >"$PERL_OUT" && \
+ build_and_scp_deb install/=/usr libarvados-perl "Curoverse, Inc." dir \
+ "$(version_from_git)"
+
+# Ruby gems
+if [[ "$DEBUG" != 0 ]]; then
+ echo
+ echo "Ruby gems"
+ echo
+fi
+
+if type rvm-exec 2>/dev/null; then
+ FPM_GEM_PREFIX=$(rvm-exec system gem environment gemdir)
+else
+ FPM_GEM_PREFIX=$(gem environment gemdir)
+fi
+
+cd "$WORKSPACE"
+cd sdk/ruby
+# clean up old packages
+find -maxdepth 1 \( -name 'arvados-*.gem' -or -name 'rubygem-arvados_*.deb' \) \
+ -delete
+
+if [[ "$DEBUG" != 0 ]]; then
+ gem build arvados.gemspec
+else
+ # -q appears to be broken in gem version 2.2.2
+ gem build arvados.gemspec -q >/dev/null
+fi
+
+if [[ "$UPLOAD" != 0 ]]; then
+ # publish new gem
+ gem push arvados-*gem
+fi
+
+build_and_scp_deb arvados-*.gem "" "Curoverse, Inc." gem "" \
+ --prefix "$FPM_GEM_PREFIX"
+
+# Build arvados-cli GEM
+cd "$WORKSPACE"
+cd sdk/cli
+# clean up old gems
+rm -f arvados-cli*gem
+
+if [[ "$DEBUG" != 0 ]]; then
+ gem build arvados-cli.gemspec
+else
+ # -q appears to be broken in gem version 2.2.2
+ gem build arvados-cli.gemspec -q >/dev/null
+fi
+
+if [[ "$UPLOAD" != 0 ]]; then
+ # publish new gem
+ gem push arvados-cli*gem
+fi
+
+# Python packages
+if [[ "$DEBUG" != 0 ]]; then
+ echo
+ echo "Python packages"
+ echo
+fi
+
+cd "$WORKSPACE"
+
+cd sdk/python
+handle_python_package
+
+cd ../../services/fuse
+handle_python_package
+
+cd ../../services/nodemanager
+handle_python_package
+
if [[ ! -d "$WORKSPACE/debs" ]]; then
mkdir -p $WORKSPACE/debs
fi
-# Make sure our destination directory on $APTSERVER exists - prm can delete it when invoked improperly
-ssh -p2222 $APTUSER@$APTSERVER mkdir tmp
-
# Arvados-src
# We use $WORKSPACE/src-build-dir as the clean directory from which to build the src package
if [[ ! -d "$WORKSPACE/src-build-dir" ]]; then
mkdir "$WORKSPACE/src-build-dir"
cd "$WORKSPACE"
- git clone https://github.com/curoverse/arvados.git src-build-dir
-fi
+ if [[ "$DEBUG" != 0 ]]; then
+ git clone https://github.com/curoverse/arvados.git src-build-dir
+ else
+ git clone -q https://github.com/curoverse/arvados.git src-build-dir
+ fi
+fi
cd "$WORKSPACE/src-build-dir"
-git fetch -a
-git checkout $GIT_REV
-cd $WORKSPACE
+# just in case, check out master
+if [[ "$DEBUG" != 0 ]]; then
+ git checkout master
+ git pull
+ # go into detached-head state
+ git checkout `git log --format=format:%h -n1 .`
+else
+ git checkout -q master
+ git pull -q
+ # go into detached-head state
+ git checkout -q `git log --format=format:%h -n1 .`
+fi
+# Build arvados src deb package
+cd "$WORKSPACE"
+PKG_VERSION=$(version_from_git)
cd $WORKSPACE/debs
-build_and_scp_deb $WORKSPACE/src-build-dir/=/usr/local/arvados/src arvados-src 'Curoverse, Inc.' 'dir' "-v 0.1.$GIT_HASH -x 'usr/local/arvados/src/.git*'"
+build_and_scp_deb $WORKSPACE/src-build-dir/=/usr/local/arvados/src arvados-src 'Curoverse, Inc.' 'dir' "$PKG_VERSION" "--exclude=usr/local/arvados/src/.git" "--url=https://arvados.org" "--license=GNU Affero General Public License, version 3.0" "--description=The Arvados source code" "--architecture=all"
+
+# clean up, check out master and step away from detached-head state
+cd "$WORKSPACE/src-build-dir"
+if [[ "$DEBUG" != 0 ]]; then
+ git checkout master
+else
+ git checkout -q master
+fi
# Keep
-cd $WORKSPACE/services/keep
-./go.sh install keep
+export GOPATH=$(mktemp -d)
+mkdir -p "$GOPATH/src/git.curoverse.com"
+ln -sfn "$WORKSPACE" "$GOPATH/src/git.curoverse.com/arvados.git"
+
+# keepstore
+cd "$GOPATH/src/git.curoverse.com/arvados.git/services/keepstore"
+PKG_VERSION=$(version_from_git)
+go get "git.curoverse.com/arvados.git/services/keepstore"
cd $WORKSPACE/debs
-build_and_scp_deb $WORKSPACE/services/keep/bin/keep=/usr/bin/keep keep 'Curoverse, Inc.' 'dir' "-v 0.1.$GIT_HASH"
+build_and_scp_deb $GOPATH/bin/keepstore=/usr/bin/keepstore keepstore 'Curoverse, Inc.' 'dir' "$PKG_VERSION" "--url=https://arvados.org" "--license=GNU Affero General Public License, version 3.0" "--description=Keepstore is the Keep storage daemon, accessible to clients on the LAN"
-# Keep proxy
+# keepproxy
+cd "$GOPATH/src/git.curoverse.com/arvados.git/sdk/go"
+GO_SDK_VERSION=$(version_from_git)
+GO_SDK_TIMESTAMP=$(timestamp_from_git)
-# First build the keepclient library
-cd $WORKSPACE/sdk/go
-./go.sh install arvados.org/keepclient
+cd "$GOPATH/src/git.curoverse.com/arvados.git/services/keepproxy"
+KEEPPROXY_VERSION=$(version_from_git)
+KEEPPROXY_TIMESTAMP=$(timestamp_from_git)
-# Then keepproxy
-cd $WORKSPACE/services/keep
-./go.sh install arvados.org/keepproxy
-cd $WORKSPACE/debs
-build_and_scp_deb $WORKSPACE/services/keep/bin/keepproxy=/usr/bin/keepproxy keepproxy 'Curoverse, Inc.' 'dir' "-v 0.1.$GIT_HASH"
+if [[ "$GO_SDK_TIMESTAMP" -gt "$KEEPPROXY_TIMESTAMP" ]]; then
+ PKG_VERSION=$GO_SDK_VERSION
+else
+ PKG_VERSION=$KEEPPROXY_VERSION
+fi
-# The crunchstat wrapper
-cd $WORKSPACE/services/crunch/crunchstat
-./go.sh install arvados.org/crunchstat
+go get "git.curoverse.com/arvados.git/services/keepproxy"
cd $WORKSPACE/debs
-build_and_scp_deb $WORKSPACE/services/crunch/crunchstat/bin/crunchstat=/usr/bin/crunchstat crunchstat 'Curoverse, Inc.' 'dir' "-v 0.1.$GIT_HASH"
-
-# The Python SDK
-cd $WORKSPACE/sdk/python
-sed -i'' -e "s:version='0.1':version='0.1.$GIT_HASH':" setup.py
+build_and_scp_deb $GOPATH/bin/keepproxy=/usr/bin/keepproxy keepproxy 'Curoverse, Inc.' 'dir' "$PKG_VERSION" "--url=https://arvados.org" "--license=GNU Affero General Public License, version 3.0" "--description=Keepproxy makes a Keep cluster accessible to clients that are not on the LAN"
+# crunchstat
+cd "$GOPATH/src/git.curoverse.com/arvados.git/services/crunchstat"
+PKG_VERSION=$(version_from_git)
+go get "git.curoverse.com/arvados.git/services/crunchstat"
cd $WORKSPACE/debs
+build_and_scp_deb $GOPATH/bin/crunchstat=/usr/bin/crunchstat crunchstat 'Curoverse, Inc.' 'dir' "$PKG_VERSION" "--url=https://arvados.org" "--license=GNU Affero General Public License, version 3.0" "--description=Crunchstat gathers cpu/memory/network statistics of running Crunch jobs"
+# The Python SDK
# Please resist the temptation to add --no-python-fix-name to the fpm call here
# (which would remove the python- prefix from the package name), because this
# package is a dependency of arvados-fuse, and fpm can not omit the python-
# prefix from only one of the dependencies of a package... Maybe I could
# whip up a patch and send it upstream, but that will be for another day. Ward,
# 2014-05-15
-build_and_scp_deb $WORKSPACE/sdk/python python-arvados-python-client 'Curoverse, Inc.' 'python' "-v 0.1.${GIT_HASH}"
-
-# The FUSE driver
-cd $WORKSPACE/services/fuse
-sed -i'' -e "s:version='0.1':version='0.1.$GIT_HASH':" setup.py
-
-
cd $WORKSPACE/debs
+# Python version numbering is obscure. Strip dashes and replace them with dots
+# to match our other version numbers. Cf. commit 4afcb8c, compliance with PEP-440.
+build_and_scp_deb $WORKSPACE/sdk/python python-arvados-python-client 'Curoverse, Inc.' 'python' "$(awk '($1 == "Version:"){ gsub(/-/,".",$2); print $2 }' $WORKSPACE/sdk/python/arvados_python_client.egg-info/PKG-INFO)" "--url=https://arvados.org" "--description=The Arvados Python SDK"
+# The FUSE driver
# Please seem comment about --no-python-fix-name above; we stay consistent and do
# not omit the python- prefix first.
-build_and_scp_deb $WORKSPACE/services/fuse python-arvados-fuse 'Curoverse, Inc.' 'python' "-v 0.1.${GIT_HASH}"
+cd $WORKSPACE/debs
+# Python version numbering is obscure. Strip dashes and replace them with dots
+# to match our other version numbers. Cf. commit 4afcb8c, compliance with PEP-440.
+build_and_scp_deb $WORKSPACE/services/fuse python-arvados-fuse 'Curoverse, Inc.' 'python' "$(awk '($1 == "Version:"){ gsub(/-/,".",$2); print $2 }' $WORKSPACE/services/fuse/arvados_fuse.egg-info/PKG-INFO)" "--url=https://arvados.org" "--description=The Keep FUSE driver"
+
+# The node manager
+cd $WORKSPACE/debs
+# Python version numbering is obscure. Strip dashes and replace them with dots
+# to match our other version numbers. Cf. commit 4afcb8c, compliance with PEP-440.
+build_and_scp_deb $WORKSPACE/services/nodemanager arvados-node-manager 'Curoverse, Inc.' 'python' "$(awk '($1 == "Version:"){ gsub(/-/,".",$2); print $2}' $WORKSPACE/services/nodemanager/arvados_node_manager.egg-info/PKG-INFO)" "--url=https://arvados.org" "--description=The Arvados node manager"
# A few dependencies
-build_and_scp_deb python-gflags
-build_and_scp_deb pyvcf
-build_and_scp_deb google-api-python-client
-build_and_scp_deb httplib2
-build_and_scp_deb ws4py
-build_and_scp_deb virtualenv
+for deppkg in python-gflags pyvcf google-api-python-client oauth2client \
+ pyasn1 pyasn1-modules rsa uritemplate httplib2 ws4py virtualenv \
+ pykka apache-libcloud requests six pyexecjs jsonschema; do
+ build_and_scp_deb "$deppkg"
+done
+
+# cwltool from common-workflow-language. We use this in arv-run-pipeline-instance.
+# We use $WORKSPACE/common-workflow-language as the clean directory from which to build the cwltool package
+if [[ ! -d "$WORKSPACE/common-workflow-language" ]]; then
+ mkdir "$WORKSPACE/common-workflow-language"
+ cd "$WORKSPACE"
+ if [[ "$DEBUG" != 0 ]]; then
+ git clone https://github.com/common-workflow-language/common-workflow-language.git common-workflow-language
+ else
+ git clone -q https://github.com/common-workflow-language/common-workflow-language.git common-workflow-language
+ fi
+fi
+
+cd "$WORKSPACE/common-workflow-language"
+if [[ "$DEBUG" != 0 ]]; then
+ git checkout master
+ git pull
+else
+ git checkout -q master
+ git pull -q
+fi
+
+cd reference
+handle_python_package
+CWLTOOL_VERSION=`git log --first-parent --max-count=1 --format='format:0.1.%ct.%h'`
+
+# Build cwltool package
+cd $WORKSPACE/debs
+# Python version numbering is obscure. Strip dashes and replace them with dots
+# to match our other version numbers. Cf. commit 4afcb8c, compliance with PEP-440.
+build_and_scp_deb $WORKSPACE/common-workflow-language/reference cwltool 'Common Workflow Language Working Group' 'python' "$(awk '($1 == "Version:"){ gsub(/-/,".",$2); print $2 }' $WORKSPACE/common-workflow-language/reference/cwltool.egg-info/PKG-INFO)"
# Finally, publish the packages, if necessary
-if [[ "$CALL_PRM" != "0" ]]; then
- ssh -p2222 $APTUSER@$APTSERVER -t "cd /var/www/$APTSERVER; /usr/local/rvm/bin/rvm default do prm --type deb -p . --component main --release wheezy --arch amd64 -d /home/$APTUSER/tmp/ --gpg 1078ECD7"
+if [[ "$UPLOAD" != 0 && "$CALL_FREIGHT" != 0 ]]; then
+ ssh -p2222 $APTUSER@$APTSERVER -t "cd tmp && ls -laF *deb && freight add *deb apt/wheezy && freight cache && rm -f *deb"
else
- echo "No new packages generated. No PRM run necessary."
+ if [[ "$UPLOAD" != 0 ]]; then
+ echo "No new packages generated. No freight run necessary."
+ fi
fi
+# clean up temporary GOPATH
+rm -rf "$GOPATH"
+
+exit $EXITCODE