#!/bin/bash
+DEBUG=0
+
+function usage {
+ echo >&2
+ echo >&2 "usage: $0 [options] <identifier>"
+ echo >&2
+ echo >&2 " <identifier> Arvados cluster name"
+ echo >&2
+ echo >&2 "$0 options:"
+ echo >&2 " -d, --debug Enable debug output"
+ echo >&2 " -h, --help Display this help and exit"
+ echo >&2
+ echo >&2 "Note: this script requires an arvados token created with these permissions:"
+ echo >&2 ' arv api_client_authorization create_system_auth \'
+ echo >&2 ' --scopes "[\"GET /arvados/v1/virtual_machines\",'
+ echo >&2 ' \"GET /arvados/v1/keep_services\",'
+ echo >&2 ' \"GET /arvados/v1/groups\",'
+ echo >&2 ' \"GET /arvados/v1/links\",'
+ echo >&2 ' \"GET /arvados/v1/groups/\",'
+ echo >&2 ' \"GET /arvados/v1/keep_services/accessible\",'
+ echo >&2 ' \"POST /arvados/v1/collections\",'
+ echo >&2 ' \"POST /arvados/v1/links\"]"'
+ echo >&2
+}
+
+# NOTE: This requires GNU getopt (part of the util-linux package on Debian-based distros).
+TEMP=`getopt -o hd \
+ --long help,debug \
+ -n "$0" -- "$@"`
+
+if [ $? != 0 ] ; then echo "Use -h for help"; exit 1 ; fi
+# Note the quotes around `$TEMP': they are essential!
+eval set -- "$TEMP"
+
+while [ $# -ge 1 ]
+do
+ case $1 in
+ -d | --debug)
+ DEBUG=1
+ shift
+ ;;
+ --)
+ shift
+ break
+ ;;
+ *)
+ usage
+ exit 1
+ ;;
+ esac
+done
+
IDENTIFIER=$1
-DEPLOY_REPO=$2
if [[ "$IDENTIFIER" == '' ]]; then
- echo "Syntax: $0 <identifier> <deploy_repo_name>"
- exit 1
-fi
-
-if [[ "$DEPLOY_REPO" == '' ]]; then
- echo "Syntax: $0 <identifier> <deploy_repo_name>"
+ usage
exit 1
fi
COLUMNS=80
title () {
- printf "\n%*s\n\n" $(((${#title}+$COLUMNS)/2)) "********** $1 **********"
+ date=`date +'%Y-%m-%d %H:%M:%S'`
+ printf "$date $1\n"
}
-# We only install capistrano in dev mode
-export RAILS_ENV=development
+function run_puppet() {
+ node=$1
+ return_var=$2
-source /etc/profile.d/rvm.sh
-echo $WORKSPACE
+ title "Running puppet on $node"
+ TMP_FILE=`mktemp`
+ if [[ "$DEBUG" != "0" ]]; then
+ ssh -t -p2222 -o "StrictHostKeyChecking no" -o "ConnectTimeout 5" root@$node -C "/usr/bin/puppet agent -t" | tee $TMP_FILE
+ else
+ ssh -t -p2222 -o "StrictHostKeyChecking no" -o "ConnectTimeout 5" root@$node -C "/usr/bin/puppet agent -t" > $TMP_FILE 2>&1
+ fi
-# Weirdly, jenkins/rvm ties itself in a knot.
-rvm use default
+ ECODE=$?
+ RESULT=$(cat $TMP_FILE)
+
+ if [[ "$ECODE" != "255" && ! ("$RESULT" =~ 'already in progress') && "$ECODE" != "2" && "$ECODE" != "0" ]]; then
+ # Ssh exits 255 if the connection timed out. Just ignore that.
+ # Puppet exits 2 if there are changes. For real!
+ # Puppet prints 'Notice: Run of Puppet configuration client already in progress' if another puppet process
+ # was already running
+ echo "ERROR running puppet on $node: exit code $ECODE"
+ if [[ "$DEBUG" == "0" ]]; then
+ title "Command output follows:"
+ echo $RESULT
+ fi
+ fi
+ if [[ "$ECODE" == "255" ]]; then
+ title "Connection timed out"
+ ECODE=0
+ fi
+ if [[ "$ECODE" == "2" ]]; then
+ ECODE=0
+ fi
+ rm -f $TMP_FILE
+ eval "$return_var=$ECODE"
+}
-# Just say what version of ruby we're running
-ruby --version
+function run_command() {
+ node=$1
+ return_var=$2
+ command=$3
+
+ title "Running '$command' on $node"
+ TMP_FILE=`mktemp`
+ if [[ "$DEBUG" != "0" ]]; then
+ ssh -t -p2222 -o "StrictHostKeyChecking no" -o "ConnectTimeout 5" root@$node -C "$command" | tee $TMP_FILE
+ else
+ ssh -t -p2222 -o "StrictHostKeyChecking no" -o "ConnectTimeout 5" root@$node -C "$command" > $TMP_FILE 2>&1
+ fi
-function ensure_symlink() {
- if [[ ! -L $WORKSPACE/$1 ]]; then
- ln -s $WORKSPACE/$DEPLOY_REPO/$1 $WORKSPACE/$1
+ ECODE=$?
+ RESULT=$(cat $TMP_FILE)
+
+ if [[ "$ECODE" != "255" && "$ECODE" != "0" ]]; then
+ # Ssh exists 255 if the connection timed out. Just ignore that, it's possible that this node is
+ # a shell node that is down.
+ title "ERROR running command on $node: exit code $ECODE"
+ if [[ "$DEBUG" == "0" ]]; then
+ title "Command output follows:"
+ echo $RESULT
+ fi
+ fi
+ if [[ "$ECODE" == "255" ]]; then
+ title "Connection timed out"
+ ECODE=0
fi
+ rm -f $TMP_FILE
+ eval "$return_var=$ECODE"
}
-# Check out/update the $DEPLOY_REPO repository
-if [[ ! -d $DEPLOY_REPO ]]; then
- mkdir $DEPLOY_REPO
- git clone git@git.curoverse.com:$DEPLOY_REPO.git
+title "Loading ARVADOS_API_HOST and ARVADOS_API_TOKEN"
+if [[ -f "$HOME/.config/arvados/$IDENTIFIER.arvadosapi.com.conf" ]]; then
+ . $HOME/.config/arvados/$IDENTIFIER.arvadosapi.com.conf
else
- cd $DEPLOY_REPO
- git pull
+ title "WARNING: $HOME/.config/arvados/$IDENTIFIER.arvadosapi.com.conf not found."
+fi
+if [[ "$ARVADOS_API_HOST" == "" ]] || [[ "$ARVADOS_API_TOKEN" == "" ]]; then
+ title "ERROR: ARVADOS_API_HOST and/or ARVADOS_API_TOKEN environment variables are not set."
+ exit 1
fi
-# Make sure the necessary symlinks are in place
-cd "$WORKSPACE"
-ensure_symlink "apps/workbench/Capfile.workbench.$IDENTIFIER"
-ensure_symlink "apps/workbench/config/deploy.common.rb"
-ensure_symlink "apps/workbench/config/deploy.curoverse.rb"
-ensure_symlink "apps/workbench/config/deploy.workbench.$IDENTIFIER.rb"
-
-ensure_symlink "services/api/Capfile.$IDENTIFIER"
-ensure_symlink "services/api/config/deploy.common.rb"
-ensure_symlink "services/api/config/deploy.$IDENTIFIER.rb"
-
-# Deploy API server
-title "Deploying API server"
-cd "$WORKSPACE"
-cd services/api
-
-bundle install --deployment
+title "Locating Arvados Standard Docker images project"
-# make sure we do not print the output of config:check
-sed -i'' -e "s/RAILS_ENV=production #{rake} config:check/RAILS_ENV=production QUIET=true #{rake} config:check/" $WORKSPACE/$DEPLOY_REPO/services/api/config/deploy.common.rb
+JSON_FILTER="[[\"name\", \"=\", \"Arvados Standard Docker Images\"], [\"owner_uuid\", \"=\", \"$IDENTIFIER-tpzed-000000000000000\"]]"
+DOCKER_IMAGES_PROJECT=`ARVADOS_API_HOST=$ARVADOS_API_HOST ARVADOS_API_TOKEN=$ARVADOS_API_TOKEN arv --format=uuid group list --filters="$JSON_FILTER"`
-bundle exec cap deploy -f Capfile.$IDENTIFIER
+if [[ "$DOCKER_IMAGES_PROJECT" == "" ]]; then
+ title "Warning: Arvados Standard Docker Images project not found. Creating it."
-ECODE=$?
+ DOCKER_IMAGES_PROJECT=`ARVADOS_API_HOST=$ARVADOS_API_HOST ARVADOS_API_TOKEN=$ARVADOS_API_TOKEN arv --format=uuid group create --group "{\"owner_uuid\":\"$IDENTIFIER-tpzed-000000000000000\", \"name\":\"Arvados Standard Docker Images\", \"group_class\":\"project\"}"`
+ ARVADOS_API_HOST=$ARVADOS_API_HOST ARVADOS_API_TOKEN=$ARVADOS_API_TOKEN arv link create --link "{\"tail_uuid\":\"$IDENTIFIER-j7d0g-fffffffffffffff\", \"head_uuid\":\"$DOCKER_IMAGES_PROJECT\", \"link_class\":\"permission\", \"name\":\"can_read\" }"
+ if [[ "$?" != "0" ]]; then
+ title "ERROR: could not create standard Docker images project Please create it, cf. http://doc.arvados.org/install/create-standard-objects.html"
+ exit 1
+ fi
+fi
-# restore unaltered deploy.common.rb
-cd $WORKSPACE/$DEPLOY_REPO
-git checkout services/api/config/deploy.common.rb
+title "Found Arvados Standard Docker Images project with uuid $DOCKER_IMAGES_PROJECT"
+GIT_COMMIT=`ssh -o "StrictHostKeyChecking no" $IDENTIFIER cat /usr/local/arvados/src/git-commit.version`
-if [[ "$ECODE" != "0" ]]; then
- title "!!!!!! DEPLOYING API SERVER FAILED !!!!!!"
- EXITCODE=$(($EXITCODE + $ECODE))
- exit $EXITCODE
+if [[ "$?" != "0" ]] || [[ "$GIT_COMMIT" == "" ]]; then
+ title "ERROR: unable to get arvados/jobs Docker image git revision"
+ exit 1
+else
+ title "Found git commit for arvados/jobs Docker image: $GIT_COMMIT"
fi
-title "Deploying API server complete"
-
-# Install updated debian packages
-title "Deploying updated arvados debian packages"
+run_command shell.$IDENTIFIER ECODE "ARVADOS_API_HOST=$ARVADOS_API_HOST ARVADOS_API_TOKEN=$ARVADOS_API_TOKEN /usr/local/rvm/bin/rvm-exec default arv keep docker" |grep -q $GIT_COMMIT
-ssh -p2222 $IDENTIFIER.arvadosapi.com -C "apt-get update && apt-get install arvados-src python-arvados-fuse python-arvados-python-client"
+if [[ "$?" == "0" ]]; then
+ title "Found latest arvados/jobs Docker image, nothing to upload"
+else
+ title "Installing latest arvados/jobs Docker image"
+ ssh -o "StrictHostKeyChecking no" shell.$IDENTIFIER "ARVADOS_API_HOST=$ARVADOS_API_HOST ARVADOS_API_TOKEN=$ARVADOS_API_TOKEN /usr/local/rvm/bin/rvm-exec default arv keep docker --pull --project-uuid=$DOCKER_IMAGES_PROJECT arvados/jobs $GIT_COMMIT"
+fi
-if [[ "$ECODE" != "0" ]]; then
- title "!!!!!! DEPLOYING DEBIAN PACKAGES FAILED !!!!!!"
- EXITCODE=$(($EXITCODE + $ECODE))
+title "Gathering list of shell and Keep nodes"
+SHELL_NODES=`ARVADOS_API_HOST=$ARVADOS_API_HOST ARVADOS_API_TOKEN=$ARVADOS_API_TOKEN arv virtual_machine list |jq .items[].hostname -r`
+KEEP_NODES=`ARVADOS_API_HOST=$ARVADOS_API_HOST ARVADOS_API_TOKEN=$ARVADOS_API_TOKEN arv keep_service list |jq .items[].service_host -r`
+
+title "Updating API server"
+SUM_ECODE=0
+run_puppet $IDENTIFIER ECODE
+SUM_ECODE=$(($SUM_ECODE + $ECODE))
+run_command $IDENTIFIER ECODE "/usr/local/bin/arvados-api-server-upgrade.sh"
+SUM_ECODE=$(($SUM_ECODE + $ECODE))
+run_command $IDENTIFIER ECODE "dpkg -L arvados-mailchimp-plugin 2>/dev/null && apt-get install arvados-mailchimp-plugin --reinstall || echo"
+SUM_ECODE=$(($SUM_ECODE + $ECODE))
+
+if [[ "$SUM_ECODE" != "0" ]]; then
+ title "ERROR: Updating API server FAILED"
+ EXITCODE=$(($EXITCODE + $SUM_ECODE))
exit $EXITCODE
fi
-title "Deploying updated arvados debian packages complete"
-
-# Deploy Workbench
-title "Deploying workbench"
-cd "$WORKSPACE"
-cd apps/workbench
-bundle install --deployment
-
-# make sure we do not print the output of config:check
-sed -i'' -e "s/RAILS_ENV=production #{rake} config:check/RAILS_ENV=production QUIET=true #{rake} config:check/" $WORKSPACE/$DEPLOY_REPO/apps/workbench/config/deploy.common.rb
-
-bundle exec cap deploy -f Capfile.workbench.$IDENTIFIER
-
-ECODE=$?
+title "Updating workbench"
+SUM_ECODE=0
+if [[ `host workbench.$ARVADOS_API_HOST` != `host $ARVADOS_API_HOST` ]]; then
+ # Workbench runs on a separate host. We need to run puppet there too.
+ run_puppet workbench.$IDENTIFIER ECODE
+ SUM_ECODE=$(($SUM_ECODE + $ECODE))
+fi
-# restore unaltered deploy.common.rb
-cd $WORKSPACE/$DEPLOY_REPO
-git checkout apps/workbench/config/deploy.common.rb
+run_command workbench.$IDENTIFIER ECODE "/usr/local/bin/arvados-workbench-upgrade.sh"
+SUM_ECODE=$(($SUM_ECODE + $ECODE))
-if [[ "$ECODE" != "0" ]]; then
- title "!!!!!! DEPLOYING WORKBENCH FAILED !!!!!!"
- EXITCODE=$(($EXITCODE + $ECODE))
+if [[ "$SUM_ECODE" != "0" ]]; then
+ title "ERROR: Updating workbench FAILED"
+ EXITCODE=$(($EXITCODE + $SUM_ECODE))
exit $EXITCODE
fi
-title "Deploying workbench complete"
+for n in manage $SHELL_NODES $KEEP_NODES; do
+ ECODE=0
+ if [[ $n =~ $ARVADOS_API_HOST$ ]]; then
+ # e.g. keep.qr1hi.arvadosapi.com
+ node=$n
+ else
+ # e.g. shell
+ node=$n.$ARVADOS_API_HOST
+ fi
+
+ # e.g. keep.qr1hi
+ node=${node%.arvadosapi.com}
-exit $EXITCODE
+ title "Updating $node"
+ run_puppet $node ECODE
+ if [[ "$ECODE" != "0" ]]; then
+ title "ERROR: Updating $node node FAILED: exit code $ECODE"
+ EXITCODE=$(($EXITCODE + $ECODE))
+ exit $EXITCODE
+ fi
+done
projects / arvados-dev.git / blobdiff