# DOCKER
title "Starting docker build"
-# clean up existing docker containers and images
-docker.io stop $(docker.io ps -a -q)
-docker.io rm $(docker.io ps -a -q)
-docker.io rmi $(docker.io images -q)
-
# clean up the docker build environment
cd "$WORKSPACE"
cd docker
title "docker build complete"
+title "Starting docker java-bwa-samtools build"
+
+./build.sh java-bwa-samtools-image
+
+ECODE=$?
+
+if [[ "$ECODE" != "0" ]]; then
+ title "!!!!!! docker java-bwa-samtools BUILD FAILED !!!!!!"
+ EXITCODE=$(($EXITCODE + $ECODE))
+fi
+
+title "docker build java-bwa-samtools complete"
+
exit $EXITCODE