From 91989ff55dbc6d5af9103ed7f3cf2be77701d595 Mon Sep 17 00:00:00 2001 From: Peter Amstutz Date: Tue, 16 Feb 2021 18:55:31 -0500 Subject: [PATCH] Try fixing solution links again --- _episodes/01-introduction.md | 2 +- _episodes/02-workflow.md | 2 +- _episodes/03-running.md | 2 +- _episodes/04-commandlinetool.md | 4 ++-- _episodes/05-scatter.md | 18 +++++++++--------- _episodes/06-expressions.md | 8 ++++---- 6 files changed, 18 insertions(+), 18 deletions(-) diff --git a/_episodes/01-introduction.md b/_episodes/01-introduction.md index 84cb274..c51e9ad 100644 --- a/_episodes/01-introduction.md +++ b/_episodes/01-introduction.md @@ -39,7 +39,7 @@ expression". The entire process looks like this: -![](../assets/img/RNAseqWorkflow.png){: height="400px"} +![]({{ relative_root_path }}/assets/img/RNAseqWorkflow.png){: height="400px"} For this training, we are only concerned with the middle analytical steps (skipping adapter trimming). diff --git a/_episodes/02-workflow.md b/_episodes/02-workflow.md index 8e76a00..6e173e1 100644 --- a/_episodes/02-workflow.md +++ b/_episodes/02-workflow.md @@ -450,5 +450,5 @@ outputs: {: .language-yaml } > ## Episode solution -> * main.cwl +> * main.cwl {: .solution} diff --git a/_episodes/03-running.md b/_episodes/03-running.md index 5e34eda..2fbaafc 100644 --- a/_episodes/03-running.md +++ b/_episodes/03-running.md @@ -158,7 +158,7 @@ Resource requirements you can set include: {: .challenge } > ## Episode solution -> * main.cwl +> * main.cwl {: .solution} # Workflow results diff --git a/_episodes/04-commandlinetool.md b/_episodes/04-commandlinetool.md index f94e7e8..81f3447 100644 --- a/_episodes/04-commandlinetool.md +++ b/_episodes/04-commandlinetool.md @@ -266,6 +266,6 @@ add it to our workflow. {: .challenge} > ## Episode solution -> * main.cwl -> * featureCounts.cwl +> * main.cwl +> * featureCounts.cwl {: .solution} diff --git a/_episodes/05-scatter.md b/_episodes/05-scatter.md index c7826e3..a67eb23 100644 --- a/_episodes/05-scatter.md +++ b/_episodes/05-scatter.md @@ -75,9 +75,9 @@ requirements: {: .challenge } > ## Part 1 solution -> * main.cwl -> * alignment.cwl -> * featureCounts.cwl +> * main.cwl +> * alignment.cwl +> * featureCounts.cwl {: .solution} # Scattering @@ -142,9 +142,9 @@ requirements: {: .language-yaml } > ## Part 2 solution -> * main.cwl -> * alignment.cwl -> * featureCounts.cwl +> * main.cwl +> * alignment.cwl +> * featureCounts.cwl {: .solution} # Input parameter lists @@ -260,7 +260,7 @@ outputs: {: .challenge } > ## Episode solution -> * main.cwl -> * alignment.cwl -> * featureCounts.cwl +> * main.cwl +> * alignment.cwl +> * featureCounts.cwl {: .solution} diff --git a/_episodes/06-expressions.md b/_episodes/06-expressions.md index 651e560..d6349b1 100644 --- a/_episodes/06-expressions.md +++ b/_episodes/06-expressions.md @@ -166,8 +166,8 @@ outputs: {: .challenge } > ## Episode solution -> * main.cwl -> * alignment.cwl -> * featureCounts.cwl -> * subdirs.cwl +> * main.cwl +> * alignment.cwl +> * featureCounts.cwl +> * subdirs.cwl {: .solution} -- 2.30.2