Peter Amstutz [Wed, 27 Apr 2022 15:51:52 +0000 (11:51 -0400)]
Remove software carpentries logo
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>
Peter Amstutz [Tue, 26 Apr 2022 18:45:38 +0000 (14:45 -0400)]
Show arvados sections by default, instead of generic ones.
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>
Peter Amstutz [Tue, 26 Apr 2022 18:27:09 +0000 (14:27 -0400)]
Remove text stating this was produced by Software Carpentries
refs #18696
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>
Peter Amstutz [Tue, 1 Feb 2022 19:30:29 +0000 (14:30 -0500)]
Make URL into a link
Peter Amstutz [Tue, 1 Feb 2022 19:28:13 +0000 (14:28 -0500)]
Fix embed of Explorer.png
Peter Amstutz [Tue, 1 Feb 2022 18:14:24 +0000 (13:14 -0500)]
Fix tabs, improve setup documentation to be explicit about vscode
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>
Peter Amstutz [Mon, 31 Jan 2022 17:16:31 +0000 (12:16 -0500)]
Fix formatting of solution
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>
Peter Amstutz [Mon, 31 Jan 2022 14:59:49 +0000 (09:59 -0500)]
Fix link, add explicit solution to exercise
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>
Peter Amstutz [Thu, 27 Jan 2022 16:05:25 +0000 (11:05 -0500)]
Add links to solution
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>
Peter Amstutz [Thu, 27 Jan 2022 15:45:45 +0000 (10:45 -0500)]
More information about Docker
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>
Peter Amstutz [Wed, 26 Jan 2022 22:06:18 +0000 (17:06 -0500)]
Supplemental material on creating Docker images
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>
Peter Amstutz [Tue, 16 Nov 2021 15:48:38 +0000 (10:48 -0500)]
Merge pull request #9 from common-workflow-lab/ALuesink-patch-1
Fixed typo in line 99
Peter Amstutz [Tue, 16 Nov 2021 15:48:20 +0000 (10:48 -0500)]
Merge pull request #6 from ALuesink/patch-1
Added links to YAML and CWL array
ALuesink [Tue, 16 Nov 2021 15:44:19 +0000 (16:44 +0100)]
Fixed type in line 99
ALuesink [Thu, 11 Nov 2021 15:40:29 +0000 (16:40 +0100)]
Added links to YAML and CWL array
Peter Amstutz [Wed, 1 Sep 2021 16:57:51 +0000 (12:57 -0400)]
Merge pull request #5 from common-workflow-lab/jekyll-tabs-fix
Replace jekyll-tabs plugin with custom code
Luna [Fri, 28 May 2021 18:29:33 +0000 (14:29 -0400)]
Remove redundant js code from Ep 3 file
Luna [Fri, 28 May 2021 15:33:11 +0000 (11:33 -0400)]
Replace jekyll-tabs plugin with custom code
Michael R. Crusoe [Wed, 7 Apr 2021 08:37:25 +0000 (10:37 +0200)]
Delete FUNDING.yml
was overriding the CWL organization FUNDING instructions
Peter Amstutz [Wed, 17 Feb 2021 00:32:29 +0000 (19:32 -0500)]
Tweak solution
Peter Amstutz [Wed, 17 Feb 2021 00:29:19 +0000 (19:29 -0500)]
Fix lesson 02 exercise
Peter Amstutz [Wed, 17 Feb 2021 00:12:13 +0000 (19:12 -0500)]
Fix links again
Peter Amstutz [Wed, 17 Feb 2021 00:00:17 +0000 (19:00 -0500)]
Don't use link
Peter Amstutz [Tue, 16 Feb 2021 23:55:31 +0000 (18:55 -0500)]
Try fixing solution links again
Peter Amstutz [Tue, 16 Feb 2021 23:43:22 +0000 (18:43 -0500)]
Fix solution links
Peter Amstutz [Tue, 16 Feb 2021 23:41:00 +0000 (18:41 -0500)]
Mark as beta
Peter Amstutz [Tue, 16 Feb 2021 23:40:26 +0000 (18:40 -0500)]
Updates based on practice run.
Peter Amstutz [Thu, 4 Feb 2021 19:36:56 +0000 (14:36 -0500)]
Add tabs, arvados specific instructions & links to solutions
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>
Peter Amstutz [Mon, 1 Feb 2021 15:55:13 +0000 (10:55 -0500)]
Put a little text into readme
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>
Peter Amstutz [Fri, 29 Jan 2021 22:15:07 +0000 (17:15 -0500)]
Geospatial *imaging*
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>
Peter Amstutz [Fri, 29 Jan 2021 22:12:11 +0000 (17:12 -0500)]
Fix image link
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>
Peter Amstutz [Fri, 29 Jan 2021 22:08:34 +0000 (17:08 -0500)]
Update the front page
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>
Peter Amstutz [Fri, 29 Jan 2021 21:52:38 +0000 (16:52 -0500)]
Remove symlinks
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>
Peter Amstutz [Fri, 29 Jan 2021 15:45:38 +0000 (10:45 -0500)]
Turn the "run the workflow again" instructions into exercises.
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>
Peter Amstutz [Thu, 28 Jan 2021 22:47:28 +0000 (17:47 -0500)]
Second pass. Lots of work.
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>
Peter Amstutz [Tue, 26 Jan 2021 22:41:21 +0000 (17:41 -0500)]
Formatting & content WIP
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>
Peter Amstutz [Tue, 26 Jan 2021 21:36:18 +0000 (16:36 -0500)]
Migrating to carpentries WIP
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>
Peter Amstutz [Tue, 26 Jan 2021 21:10:21 +0000 (16:10 -0500)]
wordsmithing
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>
Peter Amstutz [Tue, 26 Jan 2021 20:05:09 +0000 (15:05 -0500)]
Fix typos
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>
Peter Amstutz [Tue, 26 Jan 2021 19:45:32 +0000 (14:45 -0500)]
Add more background to lesson 1.
Add answers to each section.
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>
Peter Amstutz [Mon, 25 Jan 2021 22:29:20 +0000 (17:29 -0500)]
Get rid of separate script file
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>
Peter Amstutz [Mon, 25 Jan 2021 22:29:10 +0000 (17:29 -0500)]
Paste content of script into lesson1
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>
Peter Amstutz [Mon, 25 Jan 2021 22:27:20 +0000 (17:27 -0500)]
Remove vscode specific instructions.
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>
Peter Amstutz [Mon, 25 Jan 2021 22:22:11 +0000 (17:22 -0500)]
Add lesson 6
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>
Peter Amstutz [Mon, 25 Jan 2021 21:01:42 +0000 (16:01 -0500)]
formatting
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>
Peter Amstutz [Mon, 25 Jan 2021 20:58:41 +0000 (15:58 -0500)]
Formatting
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>
Peter Amstutz [Mon, 25 Jan 2021 20:55:58 +0000 (15:55 -0500)]
More text for lesson 5. Working on formatting.
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>
Peter Amstutz [Fri, 22 Jan 2021 22:35:42 +0000 (17:35 -0500)]
Done with 1st draft of lesson 4, working on lesson 5
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>
Peter Amstutz [Tue, 19 Jan 2021 23:01:28 +0000 (18:01 -0500)]
Still working on it.
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>
Peter Amstutz [Mon, 18 Jan 2021 22:51:10 +0000 (17:51 -0500)]
Running is lesson 2.
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>
Peter Amstutz [Fri, 15 Jan 2021 20:31:23 +0000 (15:31 -0500)]
Starting the lesson.
Peter Amstutz [Fri, 15 Jan 2021 20:08:49 +0000 (15:08 -0500)]
Initial commit
Trevor Keller [Mon, 11 Jan 2021 16:32:06 +0000 (11:32 -0500)]
Add incubator option for carpentry field. (#542)
Closes #541
François Michonneau [Fri, 8 Jan 2021 21:34:07 +0000 (16:34 -0500)]
add missing parenthesis
François Michonneau [Fri, 8 Jan 2021 16:18:15 +0000 (17:18 +0100)]
GitHub Actions: cache required R packages (#534)
François Michonneau [Fri, 8 Jan 2021 16:15:59 +0000 (17:15 +0100)]
pin ubuntu version to 20.04 (#540)
Co-authored-by: Zhian N. Kamvar <zkamvar@gmail.com>
François Michonneau [Wed, 6 Jan 2021 14:21:13 +0000 (15:21 +0100)]
include @zkamvar suggestions
Co-authored-by: Zhian N. Kamvar <zkamvar@gmail.com>
François Michonneau [Fri, 18 Dec 2020 16:42:55 +0000 (17:42 +0100)]
also delete _site
François Michonneau [Fri, 18 Dec 2020 16:02:33 +0000 (17:02 +0100)]
deploy R-based lessons without using another action
François Michonneau [Fri, 18 Dec 2020 14:26:14 +0000 (15:26 +0100)]
deploy from "website" action
Zhian N. Kamvar [Wed, 6 Jan 2021 02:08:35 +0000 (18:08 -0800)]
avoid ansi color characters from being printed
Zhian N. Kamvar [Tue, 22 Dec 2020 19:05:47 +0000 (11:05 -0800)]
Merge pull request #537 from maxim-belkin/caution-blockquote
bin/lesson_check.py: allow 'caution' blockquote
Maxim Belkin [Tue, 22 Dec 2020 17:25:06 +0000 (11:25 -0600)]
bin/lesson_check.py: allow 'caution' blockquote
Toby Hodges [Mon, 21 Dec 2020 19:21:47 +0000 (20:21 +0100)]
bin/lesson_check.py: allow 'language-*' code blocks (#532)
Zhian N. Kamvar [Fri, 18 Dec 2020 16:16:56 +0000 (08:16 -0800)]
permissive checks for pre-alpha lessons
This will fix #533
Zhian N. Kamvar [Thu, 17 Dec 2020 23:46:52 +0000 (15:46 -0800)]
No need for User Agent string
Zhian N. Kamvar [Thu, 17 Dec 2020 19:46:31 +0000 (11:46 -0800)]
Speed up builds of R-based lessons
R-based lessons might take a while to build because packages need to be compiled from source. RStudio Package Manager has compiled versions of packages for ubuntu distros starting with 16.04: https://packagemanager.rstudio.com/client/#/repos/1/overview
I've added the necessary magic in the actions yaml to make it work.
Kilian [Thu, 17 Dec 2020 11:03:48 +0000 (12:03 +0100)]
Ignore .jekyll-metatada
Maxim Belkin [Fri, 20 Nov 2020 14:42:26 +0000 (08:42 -0600)]
lesson.scss: wildcard selectors for code blocks
Maxim Belkin [Tue, 24 Nov 2020 21:06:38 +0000 (15:06 -0600)]
404 page for better learner experience
Zhian N. Kamvar [Mon, 7 Dec 2020 17:54:36 +0000 (09:54 -0800)]
add control structure
Zhian N. Kamvar [Mon, 7 Dec 2020 17:47:46 +0000 (09:47 -0800)]
run R-based lessons in forks
This is a modification for #501
Toby Hodges [Tue, 8 Dec 2020 18:09:16 +0000 (19:09 +0100)]
accept any base filename for Rmd episodes
Maxim Belkin [Tue, 24 Nov 2020 22:41:26 +0000 (16:41 -0600)]
Fix Ruby style
Zhian N. Kamvar [Wed, 2 Dec 2020 17:35:13 +0000 (09:35 -0800)]
set CRAN url if default is "@CRAN@"
This will fix #526
Toby Hodges [Mon, 9 Nov 2020 10:33:14 +0000 (11:33 +0100)]
Matlab -> MATLAB
Maxim Belkin [Thu, 5 Nov 2020 14:57:54 +0000 (08:57 -0600)]
_config.yml: mention Carpentries Incubator
Christina K [Mon, 2 Nov 2020 10:14:44 +0000 (04:14 -0600)]
removing contractions from CONTRIBUTING (#512)
François Michonneau [Wed, 28 Oct 2020 14:03:09 +0000 (15:03 +0100)]
drop patch version, fix at v1
François Michonneau [Wed, 28 Oct 2020 13:44:35 +0000 (14:44 +0100)]
bump ruby version (as specified in github-pages v209)
Maxim Belkin [Thu, 22 Oct 2020 04:34:27 +0000 (21:34 -0700)]
lesson.scss: no borders around unrecognized code (#510)
Toby Hodges [Wed, 21 Oct 2020 16:20:39 +0000 (18:20 +0200)]
update expected reference filename (#508)
François Michonneau [Tue, 20 Oct 2020 06:16:35 +0000 (08:16 +0200)]
add warning code block
François Michonneau [Tue, 20 Oct 2020 05:16:30 +0000 (07:16 +0200)]
Revert "Merge branch 'gh-pages' of github.com:carpentries/styles into gh-pages"
This reverts commit
2c6b97e57dce86830bdbde8d9f8a871c0b46a035, reversing
changes made to
53e991355f617c108912a21eae00cfe46823aca4.
François Michonneau [Wed, 7 Oct 2020 07:55:41 +0000 (09:55 +0200)]
add warning blockquote
François Michonneau [Tue, 20 Oct 2020 05:06:26 +0000 (07:06 +0200)]
Merge branch 'gh-pages' of github.com:carpentries/styles into gh-pages
Zhian N. Kamvar [Mon, 19 Oct 2020 06:45:35 +0000 (23:45 -0700)]
add default repository to install_required_packages() (#509)
Toby Hodges [Thu, 8 Oct 2020 09:06:10 +0000 (11:06 +0200)]
update link to discuss mailing list (#507)
Maxim Belkin [Mon, 21 Sep 2020 13:45:18 +0000 (06:45 -0700)]
lesson.scss: styling for DIVs for embedding Youtube videos (#503)
Maxim Belkin [Mon, 21 Sep 2020 13:22:51 +0000 (06:22 -0700)]
GH Website action: rename + don't use lesson directory (#504)
When 'Website' action tests a lesson, it checks out repositories into the current working directory: 'lesson' directory doesn't exist.
As a result, steps that use "lesson" as the working directory fail.
Maxim Belkin [Wed, 2 Sep 2020 16:18:48 +0000 (11:18 -0500)]
GitHub Action: website.yml: don't run in forks (#501)
Maxim Belkin [Tue, 25 Aug 2020 08:17:56 +0000 (03:17 -0500)]
GitHub Actions: better workflow and job names (#500)
Maxim Belkin [Tue, 25 Aug 2020 08:16:36 +0000 (03:16 -0500)]
GitHub Actions: website (#488)
François Michonneau [Sat, 22 Aug 2020 05:11:22 +0000 (07:11 +0200)]
Sync styles first (#494)
Co-authored-by: Maxim Belkin <maxim.belkin@gmail.com>
François Michonneau [Thu, 20 Aug 2020 12:56:01 +0000 (14:56 +0200)]
remove unused code highlight classes (#498)
Henry Schreiner [Wed, 19 Aug 2020 16:27:24 +0000 (12:27 -0400)]
add three more common languages (#497)
Henry Schreiner [Wed, 19 Aug 2020 14:48:29 +0000 (10:48 -0400)]
fix: tighten definitions of highlighter (#496)
Maxim Belkin [Fri, 14 Aug 2020 16:34:28 +0000 (11:34 -0500)]
GitHub Actions: check lesson template (#489)
Co-authored-by: Maxim Belkin <maxim.belkin@gmail.com>
Co-authored-by: François Michonneau <francois.michonneau@gmail.com>
François Michonneau [Thu, 13 Aug 2020 05:51:56 +0000 (07:51 +0200)]
fix variable name
François Michonneau [Tue, 11 Aug 2020 14:36:48 +0000 (16:36 +0200)]
only display Episodes drop-down if we have episodes to show (#491)
projects / rnaseq-cwl-training.git / log