Maxim Belkin [Tue, 17 Jul 2018 21:53:56 +0000 (16:53 -0500)]
Makefile: fix typo in clean-rmd rule
Raniere Silva [Thu, 12 Jul 2018 12:15:53 +0000 (13:15 +0100)]
Merge pull request #328 from carpentries/fix-survey
fix survey link variables
François Michonneau [Thu, 12 Jul 2018 05:02:15 +0000 (15:02 +1000)]
fix survey link variables
François Michonneau [Thu, 28 Jun 2018 13:12:02 +0000 (09:12 -0400)]
Merge pull request #318 from carpentries/tracykteal-patch-1
added about the discussion stage to the LC description
François Michonneau [Thu, 28 Jun 2018 13:11:48 +0000 (09:11 -0400)]
Merge branch 'gh-pages' into tracykteal-patch-1
Belinda Weaver [Thu, 28 Jun 2018 01:04:24 +0000 (11:04 +1000)]
Merge pull request #317 from carpentries/fix-311
[fix carpentries/styles#311] update descriptions of the carpentries
Tracy Teal [Wed, 27 Jun 2018 21:36:30 +0000 (14:36 -0700)]
added about the discussion stage to the LC description
François Michonneau [Wed, 27 Jun 2018 19:40:40 +0000 (15:40 -0400)]
[fix carpentries/styles#311] update descriptions of the carpentries
Maxim Belkin [Sat, 23 Jun 2018 14:00:41 +0000 (14:00 +0000)]
_config.yml: fix link to the Library Carpentry website
Pull Request: carpentries/styles#313
trk [Sat, 23 Jun 2018 13:54:36 +0000 (13:54 +0000)]
Update Library Carpentry link, resolve #304
François Michonneau [Wed, 20 Jun 2018 17:22:51 +0000 (13:22 -0400)]
lesson_check.py: check YAML headers in Rmd episodes
Check that Rmd episode files include `source: Rmd`
Fixes carpentries/styles#273
Raniere Silva [Wed, 20 Jun 2018 13:35:33 +0000 (14:35 +0100)]
Merge pull request #303 from katrinleinweber/patch-3
links.md: add links to carpentries' lessons overview pages
Katrin Leinweber [Wed, 20 Jun 2018 05:57:03 +0000 (07:57 +0200)]
Sort alphabetically
Katrin Leinweber [Wed, 20 Jun 2018 05:26:48 +0000 (07:26 +0200)]
Link to lessons (closes swcarpentry/r-novice-inflammation/#371)
François Michonneau [Tue, 19 Jun 2018 17:41:35 +0000 (13:41 -0400)]
bump version number
François Michonneau [Tue, 19 Jun 2018 17:40:37 +0000 (13:40 -0400)]
[fix carpentries/styles#300] add CODE_OF_CONDUCT.md to root
François Michonneau [Tue, 19 Jun 2018 16:00:38 +0000 (12:00 -0400)]
switch contact email to team@carpentries.org
François Michonneau [Mon, 18 Jun 2018 20:56:21 +0000 (16:56 -0400)]
Merge branch 'gh-pages' of github.com:carpentries/styles into gh-pages
François Michonneau [Fri, 15 Jun 2018 16:32:34 +0000 (12:32 -0400)]
bump version in footer
François Michonneau [Fri, 15 Jun 2018 15:55:22 +0000 (11:55 -0400)]
Add 'cp' (Carpentry) as a new lesson type
* Add 'cp' (Carpentry) as a lesson type (for instructor training)
* Explain lesson type abbreviations (swc, dc, lc, cp)
* Emphasize the fact that there is no need to edit "repository" variable in front matter
François Michonneau [Fri, 15 Jun 2018 13:10:04 +0000 (09:10 -0400)]
[fix carpentries/styles#281] add missing include links.md
François Michonneau [Tue, 12 Jun 2018 19:19:11 +0000 (15:19 -0400)]
fix URL
François Michonneau [Tue, 12 Jun 2018 16:24:07 +0000 (12:24 -0400)]
Merge pull request #295 from carpentries/update-urls
update URLs to reflect consolidation to carpentries organization
François Michonneau [Tue, 12 Jun 2018 16:22:00 +0000 (12:22 -0400)]
update URLs to reflect consolidation to carpentries organization
Raniere Silva [Tue, 12 Jun 2018 13:54:29 +0000 (14:54 +0100)]
Merge pull request #284 from maxim-belkin/fix-links-md
Add links.md to files in boilerplate
François Michonneau [Mon, 11 Jun 2018 19:59:12 +0000 (15:59 -0400)]
Merge pull request #243 from alee/docker
Makefile: add docker-serve target
Raniere Silva [Wed, 6 Jun 2018 07:22:21 +0000 (08:22 +0100)]
Merge pull request #285 from maxim-belkin/fix-conduct
Move CODE_OF_CONDUCT.md to boilerplate
Maxim Belkin [Tue, 5 Jun 2018 15:58:35 +0000 (08:58 -0700)]
Add CODE_OF_CONDUCT.md to boilerplate
Maxim Belkin [Fri, 1 Jun 2018 12:50:15 +0000 (07:50 -0500)]
Remove CODE_OF_CONDUCT.md
Raniere Silva [Sat, 2 Jun 2018 18:34:30 +0000 (19:34 +0100)]
Merge pull request #282 from mr-c/patch-1
remove permalink that breaks asset includes
Raniere Silva [Sat, 2 Jun 2018 18:27:35 +0000 (19:27 +0100)]
Merge pull request #286 from mzc9/gitIgnoreChanges
gitIgnore for R
mzc9 [Fri, 1 Jun 2018 20:02:57 +0000 (16:02 -0400)]
gitIgnore for R
Maxim Belkin [Fri, 1 Jun 2018 13:00:41 +0000 (13:00 +0000)]
Add several FIXMEs to the template episode
Maxim Belkin [Fri, 1 Jun 2018 12:59:13 +0000 (12:59 +0000)]
Remove extra blank lines
Maxim Belkin [Fri, 1 Jun 2018 12:44:24 +0000 (07:44 -0500)]
Add links.md to files in boilerplate
Michael R. Crusoe [Wed, 30 May 2018 11:43:05 +0000 (14:43 +0300)]
_config.yml: no 'mailto' in 'email'
Closes swcarpentry/styles#283
`site.email` is used as:
_includes/lesson_footer.html: <a href="mailto:{{ site.email }}">Contact</a>
_includes/workshop_footer.html: <a href="mailto:{{ site.email }}">Contact</a>
Therefore, it does not make sense to have `mailto` in the `email` itself.
Michael R. Crusoe [Wed, 30 May 2018 09:16:56 +0000 (12:16 +0300)]
remove permalink that breaks asset includes
Will also match https://raw.githubusercontent.com/swcarpentry/lesson-example/gh-pages/CONDUCT.md
Raniere Silva [Sun, 27 May 2018 20:08:08 +0000 (21:08 +0100)]
Merge pull request #280 from katrinleinweber/patch-3
Rename CoC file to align with GitHub's Community Profile expectation
Katrin Leinweber [Sun, 27 May 2018 08:04:48 +0000 (10:04 +0200)]
Upgrade repo's Community Profile
See https://help.github.com/articles/about-community-profiles-for-public-repositories/.
Raniere Silva [Thu, 24 May 2018 07:51:31 +0000 (08:51 +0100)]
Increase version to v9.5.0
Raniere Silva [Thu, 24 May 2018 07:48:51 +0000 (08:48 +0100)]
Merge pull request #279 from rgaiacs/lesson-check
Fix lesson_check.py
Raniere Silva [Thu, 24 May 2018 07:47:52 +0000 (08:47 +0100)]
Fix lesson_check.py
Raniere Silva [Thu, 24 May 2018 07:10:53 +0000 (08:10 +0100)]
Merge pull request #278 from maxim-belkin/fix264
Run lesson-fixme from within lesson-check
Maxim Belkin [Wed, 23 May 2018 18:05:40 +0000 (13:05 -0500)]
Run lesson-fixme from within lesson-check
Raniere Silva [Wed, 23 May 2018 17:38:12 +0000 (18:38 +0100)]
Update Makefile
Raniere Silva [Wed, 23 May 2018 17:32:44 +0000 (18:32 +0100)]
Merge pull request #277 from rgaiacs/bin-python3
Change shebang to Python3
Raniere Silva [Wed, 23 May 2018 17:31:15 +0000 (18:31 +0100)]
Change shebang to Python3
Close swcarpentry/styles#271
Raniere Silva [Wed, 23 May 2018 17:21:41 +0000 (18:21 +0100)]
Merge pull request #276 from rgaiacs/274
Make Jekyll ignore .Rproj
Raniere Silva [Wed, 23 May 2018 17:19:46 +0000 (18:19 +0100)]
Make Jekyll ignore .Rproj
Port of https://github.com/swcarpentry/r-novice-inflammation/commit/
9da857efb16d7351127f2d5c46fc0af660654506.
Close swcarpentry/styles#274
Raniere Silva [Wed, 23 May 2018 17:17:08 +0000 (18:17 +0100)]
Merge pull request #275 from rgaiacs/travis-build
Improve .travis.yml to build the lesson
Raniere Silva [Wed, 23 May 2018 17:15:52 +0000 (18:15 +0100)]
Improve .travis.yml to build the lesson
Raniere Silva [Wed, 23 May 2018 12:45:35 +0000 (13:45 +0100)]
Merge pull request #272 from rgaiacs/remove-root-and-layout
Remove root and layout from YAML for boilerplate
Raniere Silva [Wed, 23 May 2018 12:44:08 +0000 (13:44 +0100)]
Remove root and layout from YAML for boilerplate
Raniere Silva [Wed, 23 May 2018 08:29:17 +0000 (09:29 +0100)]
Merge pull request #269 from maxim-belkin/fix-super-call
Remove unnecessary super call
Raniere Silva [Wed, 23 May 2018 07:55:12 +0000 (08:55 +0100)]
Merge pull request #270 from maxim-belkin/py3-classes
Use Python3-style class declaration
Raniere Silva [Wed, 23 May 2018 07:43:07 +0000 (08:43 +0100)]
Merge pull request #268 from maxim-belkin/fix-returns
util.py: make functions return NotImplemented
Maxim Belkin [Tue, 22 May 2018 13:23:43 +0000 (08:23 -0500)]
Use Python3-style class declaration
Maxim Belkin [Tue, 22 May 2018 12:25:02 +0000 (07:25 -0500)]
util.py: make functions return NotImplemented
Maxim Belkin [Tue, 22 May 2018 12:09:33 +0000 (07:09 -0500)]
Remove unnecessary super call
Raniere Silva [Mon, 21 May 2018 17:37:59 +0000 (18:37 +0100)]
Merge pull request #267 from jsta/patch-2
missing comma in boilerplate generation
Joseph Stachelek [Mon, 21 May 2018 16:49:04 +0000 (12:49 -0400)]
missing comma in boilerplate generation
Raniere Silva [Mon, 21 May 2018 06:16:28 +0000 (07:16 +0100)]
Merge pull request #265 from maxim-belkin/not-implmntd
lesson_check: fix create_checker function
Raniere Silva [Mon, 21 May 2018 06:15:49 +0000 (07:15 +0100)]
Merge pull request #266 from maxim-belkin/simple-report
utils.py: simplify report function
Maxim Belkin [Sun, 20 May 2018 13:38:12 +0000 (08:38 -0500)]
utils.py: simplify report function
Maxim Belkin [Sun, 20 May 2018 13:34:42 +0000 (08:34 -0500)]
lesson_check: fix create_checker function
Raniere Silva [Fri, 18 May 2018 15:31:00 +0000 (16:31 +0100)]
Merge pull request #263 from rgaiacs/244
Fix font size of h2 in call out box
Raniere Silva [Fri, 18 May 2018 15:29:49 +0000 (16:29 +0100)]
Fix font size of h2 in call out box
Close swcarpentry/styles#244
Raniere Silva [Fri, 18 May 2018 15:26:38 +0000 (16:26 +0100)]
Merge pull request #262 from rgaiacs/248
Add README to bin/lesson_initialize.py
Andy Boughton [Fri, 18 May 2018 15:25:27 +0000 (16:25 +0100)]
Add README to bin/lesson_initialize.py
This is a revamp of swcarpentry/styles#248.
Thanks to Andy Boughton.
Raniere Silva [Fri, 18 May 2018 15:13:56 +0000 (16:13 +0100)]
Merge pull request #261 from rgaiacs/249
Fix line wrap after dash in code block
Raniere Silva [Fri, 18 May 2018 15:12:58 +0000 (16:12 +0100)]
Fix line wrap after dash in code block
Close swcarpentry/styles#249
Raniere Silva [Fri, 18 May 2018 14:04:12 +0000 (15:04 +0100)]
Merge pull request #260 from rgaiacs/shutil
Move boilerplate files to their own file
Raniere Silva [Fri, 18 May 2018 13:52:45 +0000 (14:52 +0100)]
Move boilerplate files to their own file
Raniere Silva [Fri, 18 May 2018 10:45:20 +0000 (11:45 +0100)]
Merge pull request #259 from maxim-belkin/fix-repocheck
repo_check: use argparse and remove unused variable
Raniere Silva [Fri, 18 May 2018 10:44:20 +0000 (11:44 +0100)]
Merge pull request #256 from maxim-belkin/static-get-val
lesson_check: get_val is a static method
Maxim Belkin [Fri, 18 May 2018 09:49:54 +0000 (04:49 -0500)]
repo_check: use argparse and remove unused variable
Raniere Silva [Fri, 18 May 2018 08:20:46 +0000 (09:20 +0100)]
Merge pull request #257 from maxim-belkin/py3-inits
lesson_check: Python3-style inits
Raniere Silva [Fri, 18 May 2018 08:19:54 +0000 (09:19 +0100)]
Merge pull request #258 from maxim-belkin/add-docstring
lesson_check: add missing docstring
Raniere Silva [Fri, 18 May 2018 08:14:39 +0000 (09:14 +0100)]
Merge pull request #255 from maxim-belkin/use-argparse
lesson_check: switch to argparse
Maxim Belkin [Fri, 18 May 2018 06:12:08 +0000 (01:12 -0500)]
lesson_check: add missing docstring
Maxim Belkin [Fri, 18 May 2018 06:01:29 +0000 (01:01 -0500)]
Python3-style inits
Maxim Belkin [Fri, 18 May 2018 05:30:09 +0000 (00:30 -0500)]
lesson_check: get_val is a static method
Maxim Belkin [Fri, 18 May 2018 04:52:46 +0000 (23:52 -0500)]
lesson_check: switch to argparse
Raniere Silva [Thu, 17 May 2018 20:44:43 +0000 (21:44 +0100)]
Merge pull request #253 from maxim-belkin/error-out
lesson_check.py: Exit with a status of 1 if something was wrong
Maxim Belkin [Thu, 17 May 2018 18:07:57 +0000 (13:07 -0500)]
Use --permissive flag with lesson-check-all
Maxim Belkin [Thu, 17 May 2018 17:54:17 +0000 (12:54 -0500)]
New 'permissive' flag for lesson-check
Maxim Belkin [Thu, 17 May 2018 17:35:52 +0000 (12:35 -0500)]
Exit with a status of 1 if something was wrong
Raniere Silva [Thu, 17 May 2018 09:15:11 +0000 (10:15 +0100)]
Merge pull request #252 from remram44/patch-1
Fix links in LICENSE
Remi Rampin [Thu, 17 May 2018 01:28:15 +0000 (21:28 -0400)]
Fix links in LICENSE
Small nitpicks, but it trips my link checker.
Raniere Silva [Wed, 16 May 2018 21:37:10 +0000 (22:37 +0100)]
Merge pull request #250 from fmichonneau/favicons
Favicons and logos
François Michonneau [Wed, 16 May 2018 16:20:44 +0000 (12:20 -0400)]
remove unneeded files
François Michonneau [Wed, 16 May 2018 16:15:50 +0000 (12:15 -0400)]
change alt text for Carpentries logo
François Michonneau [Tue, 15 May 2018 16:11:49 +0000 (12:11 -0400)]
remove unused .ico in root folder
François Michonneau [Tue, 15 May 2018 16:00:42 +0000 (12:00 -0400)]
use favicons for workshop page
François Michonneau [Tue, 15 May 2018 16:00:34 +0000 (12:00 -0400)]
add cp as option in footers
François Michonneau [Tue, 15 May 2018 15:50:38 +0000 (11:50 -0400)]
fix/add logos and icons for navbar
François Michonneau [Tue, 15 May 2018 15:50:21 +0000 (11:50 -0400)]
fix logos and add Carpentries as an option
François Michonneau [Tue, 15 May 2018 15:49:55 +0000 (11:49 -0400)]
add html for favicons
François Michonneau [Tue, 15 May 2018 15:45:26 +0000 (11:45 -0400)]
rename cc to cp for carpentries
François Michonneau [Tue, 15 May 2018 15:30:38 +0000 (11:30 -0400)]
add favicons for all flavors
projects / rnaseq-cwl-training.git / log