From: Raniere Silva Date: Sat, 6 May 2017 07:50:26 +0000 (+0100) Subject: Merge pull request #142 from rgaiacs/styles-library-carpentry X-Git-Url: https://git.arvados.org/rnaseq-cwl-training.git/commitdiff_plain/ac2d0d57eac188a4644ec288e89669579baff41c?hp=468a433c51ec096cdcce2aa0572a6a69bb97dda0 Merge pull request #142 from rgaiacs/styles-library-carpentry Add Library Carpentry to the workshop template --- diff --git a/_includes/dc/intro.html b/_includes/dc/intro.html new file mode 100644 index 0000000..741aeeb --- /dev/null +++ b/_includes/dc/intro.html @@ -0,0 +1,18 @@ +

+ Data Carpentry + aims to help researchers get their work done + in less time and with less pain + by teaching them basic research computing skills. + This hands-on workshop will cover basic concepts and tools, + including program design, version control, data management, + and task automation. + Participants will be encouraged to help one another + and to apply what they have learned to their own research problems. +

+

+ + For more information on what we teach and why, + please see our paper + "Best Practices for Scientific Computing". + +

diff --git a/_includes/dc/schedule.html b/_includes/dc/schedule.html new file mode 100644 index 0000000..6894a19 --- /dev/null +++ b/_includes/dc/schedule.html @@ -0,0 +1,24 @@ +
+
+

Day 1

+ + + + + + + +
09:00 Automating tasks with the Unix shell
10:30 Coffee
12:00 Lunch break
13:00 Building programs with Python
14:30 Coffee
16:00 Wrap-up
+
+
+

Day 2

+ + + + + + + +
09:00 Version control with Git
10:30 Coffee
12:00 Lunch break
13:00 Managing data with SQL
14:30 Coffee
16:00 Wrap-up
+
+
diff --git a/_includes/dc/syllabus.html b/_includes/dc/syllabus.html new file mode 100644 index 0000000..a325cee --- /dev/null +++ b/_includes/dc/syllabus.html @@ -0,0 +1,96 @@ +
+
+

The Unix Shell

+
    +
  • Files and directories
    • +
  • History and tab completion
    • +
  • Pipes and redirection
    • +
  • Looping over files
    • +
  • Creating and running shell scripts
    • +
  • Finding things
    • +
  • Reference...
    • +
+
+
+

Programming in Python

+
    +
  • Using libraries
    • +
  • Working with arrays
    • +
  • Reading and plotting data
    • +
  • Creating and using functions
    • +
  • Loops and conditionals
    • +
  • Defensive programming
    • +
  • Using Python from the command line
    • +
  • Reference...
    • +
+
+ + +
+ +
+
+

Version Control with Git

+
    +
  • Creating a repository
    • +
  • Recording changes to files: add, commit, ...
    • +
  • Viewing changes: status, diff, ...
    • +
  • Ignoring files
    • +
  • Working on the web: clone, pull, push, ...
    • +
  • Resolving conflicts
    • +
  • Open licenses
    • +
  • Where to host work, and why
    • +
  • Reference...
    • +
+
+ +
+

Open Refine

+
    +
  • Introduction to OpenRefine
    • +
  • Importing data
    • +
  • Basic functions
    • +
  • Advanced Functions
    • +
  • Reference...
    • +
+
+
diff --git a/_includes/dc/who.html b/_includes/dc/who.html new file mode 100644 index 0000000..2d8e94a --- /dev/null +++ b/_includes/dc/who.html @@ -0,0 +1,8 @@ +

+ Who: + The course is aimed at graduate students and other researchers. + + You don't need to have any previous knowledge of the tools + that will be presented at the workshop. + +

diff --git a/_includes/lc/intro.html b/_includes/lc/intro.html new file mode 100644 index 0000000..6794b54 --- /dev/null +++ b/_includes/lc/intro.html @@ -0,0 +1,19 @@ +

+ Library Carpentry + is made by librarians, for librarians to help you: +

+ +

+ + Library Carpentry introduces you to the fundamentals of computing + and provides you with a platform for further self-directed learning. + For more information on what we teach and why, please see our paper + "Library Carpentry: software skills training for library professionals". + +

diff --git a/_includes/lc/schedule.html b/_includes/lc/schedule.html new file mode 100644 index 0000000..cc2b592 --- /dev/null +++ b/_includes/lc/schedule.html @@ -0,0 +1,24 @@ +
+
+

Day 1

+ + + + + + + +
09:00 Data Intro for Librarians
10:30 Coffee
12:00 Lunch break
13:00 Shell Lessons for Libraries
14:30 Coffee
16:00 Wrap-up
+
+
+

Day 2

+ + + + + + + +
09:00 Git Intro for Librarians
10:30 Coffee
12:00 Lunch break
13:00 OpenRefine for Librarians
14:30 Coffee
16:00 Wrap-up
+
+
diff --git a/_includes/lc/syllabys.html b/_includes/lc/syllabys.html new file mode 100644 index 0000000..4dc2077 --- /dev/null +++ b/_includes/lc/syllabys.html @@ -0,0 +1,69 @@ +
+
+

Data Intro

+
    +
  • Intro to data
    • +
  • Jargon busting
    • +
  • Keyboard shortcuts
    • +
  • Plain text formats
    • +
  • Naming files
    • +
  • Regular expressions
    • +
  • Reference...
    • +
+
+
+

The Unix Shell

+
    +
  • Files and directories
    • +
  • History and tab completion
    • +
  • Counting and sorting contents in files
    • +
  • Pipes and redirection
    • +
  • Mining or searching in files
    • +
  • Reference...
    • +
+
+ +
+ +
+
+

Version Control with Git

+
    +
  • Creating a repository
    • +
  • Configuring git
    • +
  • Recording changes to files: add, commit, ...
    • +
  • Viewing state changes with status
    • +
  • Working on the web: clone, pull, push, ...
    • +
  • Where to host work, and why
    • +
  • Reference...
    • +
+
+
+
+

Open Refine

+
    +
  • Introduction to OpenRefine
    • +
  • Importing data
    • +
  • Basic functions
    • +
  • Advanced Functions
    • +
  • Reference...
    • +
+
+
+
+ diff --git a/_includes/lc/who.html b/_includes/lc/who.html new file mode 100644 index 0000000..fd9b38c --- /dev/null +++ b/_includes/lc/who.html @@ -0,0 +1,8 @@ +

+ Who: + The course is for librarians, archivists, and other information workers. + + You don't need to have any previous knowledge of the tools that + will be presented at the workshop. + +

diff --git a/_includes/navbar.html b/_includes/navbar.html index 6b21afc..00fd328 100644 --- a/_includes/navbar.html +++ b/_includes/navbar.html @@ -22,19 +22,7 @@ {% elsif page.carpentry == "lc" %} - - - {% elsif site.carpentry == "swc" %} - - - - {% elsif site.carpentry == "dc" %} - - - - {% elsif site.carpentry == "lc" %} - - + {% endif %} diff --git a/_includes/sc/intro.html b/_includes/sc/intro.html new file mode 100644 index 0000000..7b9fbf5 --- /dev/null +++ b/_includes/sc/intro.html @@ -0,0 +1,18 @@ +

+ Software Carpentry + aims to help researchers get their work done + in less time and with less pain + by teaching them basic research computing skills. + This hands-on workshop will cover basic concepts and tools, + including program design, version control, data management, + and task automation. + Participants will be encouraged to help one another + and to apply what they have learned to their own research problems. +

+

+ + For more information on what we teach and why, + please see our paper + "Best Practices for Scientific Computing". + +

diff --git a/_includes/sc/schedule.html b/_includes/sc/schedule.html new file mode 100644 index 0000000..6894a19 --- /dev/null +++ b/_includes/sc/schedule.html @@ -0,0 +1,24 @@ +
+
+

Day 1

+ + + + + + + +
09:00 Automating tasks with the Unix shell
10:30 Coffee
12:00 Lunch break
13:00 Building programs with Python
14:30 Coffee
16:00 Wrap-up
+
+
+

Day 2

+ + + + + + + +
09:00 Version control with Git
10:30 Coffee
12:00 Lunch break
13:00 Managing data with SQL
14:30 Coffee
16:00 Wrap-up
+
+
diff --git a/_includes/sc/syllabus.html b/_includes/sc/syllabus.html new file mode 100644 index 0000000..a325cee --- /dev/null +++ b/_includes/sc/syllabus.html @@ -0,0 +1,96 @@ +
+
+

The Unix Shell

+
    +
  • Files and directories
    • +
  • History and tab completion
    • +
  • Pipes and redirection
    • +
  • Looping over files
    • +
  • Creating and running shell scripts
    • +
  • Finding things
    • +
  • Reference...
    • +
+
+
+

Programming in Python

+
    +
  • Using libraries
    • +
  • Working with arrays
    • +
  • Reading and plotting data
    • +
  • Creating and using functions
    • +
  • Loops and conditionals
    • +
  • Defensive programming
    • +
  • Using Python from the command line
    • +
  • Reference...
    • +
+
+ + +
+ +
+
+

Version Control with Git

+
    +
  • Creating a repository
    • +
  • Recording changes to files: add, commit, ...
    • +
  • Viewing changes: status, diff, ...
    • +
  • Ignoring files
    • +
  • Working on the web: clone, pull, push, ...
    • +
  • Resolving conflicts
    • +
  • Open licenses
    • +
  • Where to host work, and why
    • +
  • Reference...
    • +
+
+ +
+

Open Refine

+
    +
  • Introduction to OpenRefine
    • +
  • Importing data
    • +
  • Basic functions
    • +
  • Advanced Functions
    • +
  • Reference...
    • +
+
+
diff --git a/_includes/sc/who.html b/_includes/sc/who.html new file mode 100644 index 0000000..2d8e94a --- /dev/null +++ b/_includes/sc/who.html @@ -0,0 +1,8 @@ +

+ Who: + The course is aimed at graduate students and other researchers. + + You don't need to have any previous knowledge of the tools + that will be presented at the workshop. + +

diff --git a/_includes/workshop_footer.html b/_includes/workshop_footer.html index 3ae63e6..7b2f22c 100644 --- a/_includes/workshop_footer.html +++ b/_includes/workshop_footer.html @@ -3,11 +3,22 @@ {% endcomment %}