Try fixing solution links again
authorPeter Amstutz <peter.amstutz@curii.com>
Tue, 16 Feb 2021 23:55:31 +0000 (18:55 -0500)
committerPeter Amstutz <peter.amstutz@curii.com>
Tue, 16 Feb 2021 23:55:31 +0000 (18:55 -0500)
_episodes/01-introduction.md
_episodes/02-workflow.md
_episodes/03-running.md
_episodes/04-commandlinetool.md
_episodes/05-scatter.md
_episodes/06-expressions.md

index 84cb2746c786aaccf2548a7afb8d34287a176e34..c51e9adcf1bf9db54e5ce1addceec2d7f1af5784 100644 (file)
@@ -39,7 +39,7 @@ expression".
 
 The entire process looks like this:
 
-![](../assets/img/RNAseqWorkflow.png){: height="400px"}
+![]({{ relative_root_path }}/assets/img/RNAseqWorkflow.png){: height="400px"}
 
 For this training, we are only concerned with the middle analytical
 steps (skipping adapter trimming).
index 8e76a006d1feeac272b4f6cf41337f9e095b1e57..6e173e1e44199f6b82d3d280b17b47b376d70bc9 100644 (file)
@@ -450,5 +450,5 @@ outputs:
 {: .language-yaml }
 
 > ## Episode solution
-> * <a href="{% link ../assets/answers/ep2/main.cwl %}">main.cwl</a>
+> * <a href="{{ relative_root_path }}{% link /assets/answers/ep2/main.cwl %}">main.cwl</a>
 {: .solution}
index 5e34eda84687e0251a9cfc51c7818804355ddfbf..2fbaafc9e5cb0423e3094c226038a00bdb9db3c5 100644 (file)
@@ -158,7 +158,7 @@ Resource requirements you can set include:
 {: .challenge }
 
 > ## Episode solution
-> * <a href="{% link ../assets/answers/ep3/main.cwl %}">main.cwl</a>
+> * <a href="{{ relative_root_path }}{% link /assets/answers/ep3/main.cwl %}">main.cwl</a>
 {: .solution}
 
 # Workflow results
index f94e7e8d053fc7826b608bfea20b197c9190e484..81f344700396de9b0987a7b41f2d8b15f0b227b6 100644 (file)
@@ -266,6 +266,6 @@ add it to our workflow.
 {: .challenge}
 
 > ## Episode solution
-> * <a href="{% link ../assets/answers/ep4/main.cwl %}">main.cwl</a>
-> * <a href="{% link ../assets/answers/ep4/featureCounts.cwl %}">featureCounts.cwl</a>
+> * <a href="{{ relative_root_path }}{% link /assets/answers/ep4/main.cwl %}">main.cwl</a>
+> * <a href="{{ relative_root_path }}{% link /assets/answers/ep4/featureCounts.cwl %}">featureCounts.cwl</a>
 {: .solution}
index c7826e3e847af17a391527860a433162bf4293c5..a67eb2327f5b9dfa27eade2f493d20549641cc0f 100644 (file)
@@ -75,9 +75,9 @@ requirements:
 {: .challenge }
 
 > ## Part 1 solution
-> * <a href="{% link ../assets/answers/ep5/part1/main.cwl %}">main.cwl</a>
-> * <a href="{% link ../assets/answers/ep5/part1/alignment.cwl %}">alignment.cwl</a>
-> * <a href="{% link ../assets/answers/ep5/part1/featureCounts.cwl %}">featureCounts.cwl</a>
+> * <a href="{{ relative_root_path }}{% link /assets/answers/ep5/part1/main.cwl %}">main.cwl</a>
+> * <a href="{{ relative_root_path }}{% link /assets/answers/ep5/part1/alignment.cwl %}">alignment.cwl</a>
+> * <a href="{{ relative_root_path }}{% link /assets/answers/ep5/part1/featureCounts.cwl %}">featureCounts.cwl</a>
 {: .solution}
 
 # Scattering
@@ -142,9 +142,9 @@ requirements:
 {: .language-yaml }
 
 > ## Part 2 solution
-> * <a href="{% link ../assets/answers/ep5/part2/main.cwl %}">main.cwl</a>
-> * <a href="{% link ../assets/answers/ep5/part2/alignment.cwl %}">alignment.cwl</a>
-> * <a href="{% link ../assets/answers/ep5/part2/featureCounts.cwl %}">featureCounts.cwl</a>
+> * <a href="{{ relative_root_path }}{% link /assets/answers/ep5/part2/main.cwl %}">main.cwl</a>
+> * <a href="{{ relative_root_path }}{% link /assets/answers/ep5/part2/alignment.cwl %}">alignment.cwl</a>
+> * <a href="{{ relative_root_path }}{% link /assets/answers/ep5/part2/featureCounts.cwl %}">featureCounts.cwl</a>
 {: .solution}
 
 # Input parameter lists
@@ -260,7 +260,7 @@ outputs:
 {: .challenge }
 
 > ## Episode solution
-> * <a href="{% link ../assets/answers/ep5/part4/main.cwl %}">main.cwl</a>
-> * <a href="{% link ../assets/answers/ep5/part4/alignment.cwl %}">alignment.cwl</a>
-> * <a href="{% link ../assets/answers/ep5/part4/featureCounts.cwl %}">featureCounts.cwl</a>
+> * <a href="{{ relative_root_path }}{% link /assets/answers/ep5/part4/main.cwl %}">main.cwl</a>
+> * <a href="{{ relative_root_path }}{% link /assets/answers/ep5/part4/alignment.cwl %}">alignment.cwl</a>
+> * <a href="{{ relative_root_path }}{% link /assets/answers/ep5/part4/featureCounts.cwl %}">featureCounts.cwl</a>
 {: .solution}
index 651e560cdacb3fed603fa637780a88214e743a38..d6349b1586a72af5dbed88f47f19d02c3cc0b612 100644 (file)
@@ -166,8 +166,8 @@ outputs:
 {: .challenge }
 
 > ## Episode solution
-> * <a href="{% link ../assets/answers/ep6/main.cwl %}">main.cwl</a>
-> * <a href="{% link ../assets/answers/ep6/alignment.cwl %}">alignment.cwl</a>
-> * <a href="{% link ../assets/answers/ep6/featureCounts.cwl %}">featureCounts.cwl</a>
-> * <a href="{% link ../assets/answers/ep6/subdirs.cwl %}">subdirs.cwl</a>
+> * <a href="{{ relative_root_path }}{% link /assets/answers/ep6/main.cwl %}">main.cwl</a>
+> * <a href="{{ relative_root_path }}{% link /assets/answers/ep6/alignment.cwl %}">alignment.cwl</a>
+> * <a href="{{ relative_root_path }}{% link /assets/answers/ep6/featureCounts.cwl %}">featureCounts.cwl</a>
+> * <a href="{{ relative_root_path }}{% link /assets/answers/ep6/subdirs.cwl %}">subdirs.cwl</a>
 {: .solution}