Merge pull request #188 from wclose/update_lesson_initialize

Updated lesson_initialize

diff --cc bin/lesson_initialize.py
index 757779609994f62f9a0995cf64c41f8c447513de,3f713c9668b894d9e1260a7d7da572eac0f26bbd..acb253b542fc9009602a3c7351352f6b37aeba04
--- 1/bin/lesson_initialize.py
--- 2/bin/lesson_initialize.py
+++ b/bin/lesson_initialize.py
@@@ -162,11 -160,10 +160,10 @@@ You can also [reach us by email][email]
  [github-flow]: https://guides.github.com/introduction/flow/
  [github-join]: https://github.com/join
  [how-contribute]: https://egghead.io/series/how-to-contribute-to-an-open-source-project-on-github
- [issues]: https://github.com/swcarpentry/FIXME/issues/
- [repo]: https://github.com/swcarpentry/FIXME/
+ [issues]: https://guides.github.com/features/issues/
  [swc-issues]: https://github.com/issues?q=user%3Aswcarpentry
 -[swc-lessons]: http://software-carpentry.org/lessons/
 -[swc-site]: http://software-carpentry.org/
 +[swc-lessons]: https://software-carpentry.org/lessons/
 +[swc-site]: https://software-carpentry.org/
  '''
  
  ROOT_CONFIG_YML = '''\