X-Git-Url: https://git.arvados.org/rnaseq-cwl-training.git/blobdiff_plain/d1281913efdd2822675ce7afee5ee7de93c82416..aaf5d76ce4a561bfdb03996bf4667e3030099f7f:/_includes/links.md

diff --git a/_includes/links.md b/_includes/links.md
index 273d63e..abe6093 100644
--- a/_includes/links.md
+++ b/_includes/links.md
@@ -1,12 +1,17 @@
+{% include base_path.html %}
 [cc-by-human]: https://creativecommons.org/licenses/by/4.0/
 [cc-by-legal]: https://creativecommons.org/licenses/by/4.0/legalcode
+[ci]: http://communityin.org/
+[coc-reporting]: https://docs.carpentries.org/topic_folders/policies/incident-reporting.html
+[coc]: https://docs.carpentries.org/topic_folders/policies/code-of-conduct.html
 [concept-maps]: https://carpentries.github.io/instructor-training/05-memory/
-[email]: mailto:lessons@software-carpentry.org
 [contrib-covenant]: https://contributor-covenant.org/
-[contributing]: {{ site.github.repository_url }}/blob/gh-pages/CONTRIBUTING.md
-[cran-checkpoint]: https://cran.r-project.org/web/packages/checkpoint/index.html
-[cran-knitr]: https://cran.r-project.org/web/packages/knitr/index.html
-[cran-stringr]: https://cran.r-project.org/web/packages/stringr/index.html
+[contributing]: {{ repo_url }}/blob/{{ source_branch }}/CONTRIBUTING.md
+[cran-checkpoint]: https://cran.r-project.org/package=checkpoint
+[cran-knitr]: https://cran.r-project.org/package=knitr
+[cran-stringr]: https://cran.r-project.org/package=stringr
+[dc-lessons]: http://www.datacarpentry.org/lessons/
+[email]: mailto:team@carpentries.org
 [github-importer]: https://import.github.com/
 [importer]: https://github.com/new/import
 [jekyll-collection]: https://jekyllrb.com/docs/collections/
@@ -14,6 +19,15 @@
 [jekyll-windows]: http://jekyll-windows.juthilo.com/
 [jekyll]: https://jekyllrb.com/
 [jupyter]: https://jupyter.org/
+[kramdown]: https://kramdown.gettalong.org/
+[lc-lessons]: https://librarycarpentry.org/lessons/
+[lesson-aio]: {{ relative_root_path }}{% link aio.md %}
+[lesson-coc]: {{ relative_root_path }}{% link CODE_OF_CONDUCT.md %}
+[lesson-example]: https://carpentries.github.io/lesson-example/
+[lesson-license]: {{ relative_root_path }}{% link LICENSE.md %}
+[lesson-mainpage]: {{ relative_root_path }}{% link index.md %}
+[lesson-reference]: {{ relative_root_path }}{% link reference.md %}
+[lesson-setup]: {{ relative_root_path }}{% link setup.md %}
 [mit-license]: https://opensource.org/licenses/mit-license.html
 [morea]: https://morea-framework.github.io/
 [numfocus]: https://numfocus.org/
@@ -21,16 +35,15 @@
 [pandoc]: https://pandoc.org/
 [paper-now]: https://github.com/PeerJ/paper-now
 [python-gapminder]: https://swcarpentry.github.io/python-novice-gapminder/
-[pyyaml]: https://pypi.python.org/pypi/PyYAML
-[r-markdown]: http://rmarkdown.rstudio.com/
+[pyyaml]: https://pypi.org/project/PyYAML/
+[r-markdown]: https://rmarkdown.rstudio.com/
 [rstudio]: https://www.rstudio.com/
 [ruby-install-guide]: https://www.ruby-lang.org/en/downloads/
 [ruby-installer]: https://rubyinstaller.org/
 [rubygems]: https://rubygems.org/pages/download/
-[styles]: https://github.com/swcarpentry/styles/
-[training]: https://swcarpentry.github.io/instructor-training/
+[styles]: https://github.com/carpentries/styles/
+[swc-lessons]: https://software-carpentry.org/lessons/
+[swc-releases]: https://github.com/swcarpentry/swc-releases
+[training]: https://carpentries.github.io/instructor-training/
 [workshop-repo]: {{ site.workshop_repo }}
 [yaml]: http://yaml.org/
-[coc]: https://software-carpentry.org/conduct/
-[coc-reporting]: https://software-carpentry.org/CoC-reporting/
-[lesson-example]: https://swcarpentry.github.io/lesson-example/