X-Git-Url: https://git.arvados.org/rnaseq-cwl-training.git/blobdiff_plain/cc0502fd089480c65fb1e3b202bbe8c276a6c8ab..d5374e266a3507fc69068b80a28f4d75ea5dbd19:/lesson1/lesson1.md diff --git a/lesson1/lesson1.md b/lesson1/lesson1.md index f394c90..cf10e40 100644 --- a/lesson1/lesson1.md +++ b/lesson1/lesson1.md @@ -7,9 +7,7 @@ In this lesson we will turn `rnaseq_analysis_on_input_file.sh` into a workflow. We will create a new git repository and import a library of existing tool definitions that will help us build our workflow. -1. Select "Terminal->New terminal" - -2. Create a new git repository to hold our workflow with this command: +Create a new git repository to hold our workflow with this command: ``` git init rnaseq-cwl-training-exercises @@ -21,11 +19,7 @@ On Arvados use this: git clone https://github.com/arvados/arvados-vscode-cwl-template.git rnaseq-cwl-training-exercises ``` -3. Go to File->Open Folder and select rnaseq-cwl-training-exercises - -4. Go to the terminal window - -5. Import bio-cwl-tools with this command: +Next, import bio-cwl-tools with this command: ``` git submodule add https://github.com/common-workflow-library/bio-cwl-tools.git