X-Git-Url: https://git.arvados.org/rnaseq-cwl-training.git/blobdiff_plain/91989ff55dbc6d5af9103ed7f3cf2be77701d595..HEAD:/_episodes/02-workflow.md
diff --git a/_episodes/02-workflow.md b/_episodes/02-workflow.md
index 6e173e1..64851c5 100644
--- a/_episodes/02-workflow.md
+++ b/_episodes/02-workflow.md
@@ -317,13 +317,16 @@ correspond to the command line parmeters from our source script.
> correspond to the command line arguments used in the source script:
> `--runThreadN`, `--genomeDir`, `--outSAMtype`, and
> `--outSAMunmapped`. Also identify the name of the output parameter.
-> Use these to write the STAR step.
>
> > ## Solution
> >
-> > input parameter name: RunThreadN, GenomeDir, ForwardReads, OutSAMtype, SortedByCoordinate, OutSAMunmapped
+> > * `--runThreadN` → `RunThreadN`
+> > * `--genomeDir` → `GenomeDir`
+> > * `--readFilesIn` → `ForwardReads`
+> > * `--outSAMtype` → `OutSAMtype`, `SortedByCoordinate`
+> > * `--outSAMunmapped` → `OutSAMunmapped`
> >
-> > output parameter name: alignment
+> > output parameter name: `alignment`
> {: .solution}
{: .challenge}
@@ -359,7 +362,7 @@ correspond to the command line parmeters from our source script.
> ## Exercise
>
-> Using the input and output parameters identified in the last
+> Using the input and output parameters identified in the previous
> exercise, write the `run`, `in` and `out` sections of the STAR step.
>
> > ## Solution
@@ -450,5 +453,5 @@ outputs:
{: .language-yaml }
> ## Episode solution
-> * main.cwl
+> * main.cwl
{: .solution}